View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_high_41 (Length: 214)
Name: NF1566_high_41
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 22232414 - 22232246
Alignment:
| Q |
1 |
ttaactaaaattaatttatttaaaatgaagttttcttaccctagaatcaaattcaatctcaatttcttatcatttcttttcattgcacctctcacacact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22232414 |
ttaactaaaattaatttatttaaaatgaagttttcttaccctagaatcaaattcaatctcaatttcttatcatttcttttcattgcacctctcacacact |
22232315 |
T |
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| Q |
101 |
acaatgtttatcctgccataataaactgtccataaataagttagtaatagttttctgttgatatgatat |
169 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22232314 |
acaatgtttatcctgccataataaactgtccataaataagttagtaatagttttctgttgatatgatat |
22232246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 22232227 - 22232172
Alignment:
| Q |
158 |
ttgatatgatatgatatcatatgaaggcttgtaatatgaatatccgacaaacatag |
213 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22232227 |
ttgatatgatatcatatcatatgaaggcttgtaatatgaatatccgacaaacatag |
22232172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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