View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_high_8 (Length: 430)
Name: NF1566_high_8
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 24800436 - 24800848
Alignment:
| Q |
18 |
ggaatcctccacaacttatcaaagaccttcttctcatcctctcaccacttctcgtctaacaacattaaattttctaatttaacatatgatgacttcaccg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24800436 |
ggaatcctccacaacttatcaaagaccttcttctcatcctctcaccacttctcttctaacaacattaaattttctaatttaacatatgatgacttcaccg |
24800535 |
T |
|
| Q |
118 |
aaaaaactccgtcctccttcaatctccacctccaaacatccttctcttgtgaccacacaaaatcctccaaatcatcccgcaaaacatttagatgttgttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24800536 |
aaaaaactccgtcctccttcaatctccacctccaaacatccttctcttgtgaccacacaaaaccctccaaatcatcccgcaaaacatttagatgttgttc |
24800635 |
T |
|
| Q |
218 |
ctcctaatgagagaaacaatgtctccaagaaaacctctactctccaccctcgtcaatctctccttaagtttcttgttggtttgatattgagtaaagccta |
317 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24800636 |
ctcataatgagagaaacaatgtctccaagaaaacctctactctccaccctcgtcaatctctcctaaagtttcttgttggtttgatattgagtaaagccta |
24800735 |
T |
|
| Q |
318 |
gggtatttcgcatgcagcgtcatttcccttcgccacaccacattcaaaaaattagtatccaagtcattatccactctccttactacctttgaattaaacc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24800736 |
gggtatttcgcatgcagcgtcatttcccttcgccacaccacattcaaaaaattagtatccaagtcattatccactctccttactaccttcgaattaaacc |
24800835 |
T |
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| Q |
418 |
aatttagacctac |
430 |
Q |
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||||||||||||| |
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| T |
24800836 |
aatttagacctac |
24800848 |
T |
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