View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1566_high_9 (Length: 403)

Name: NF1566_high_9
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1566_high_9
NF1566_high_9
[»] chr2 (4 HSPs)
chr2 (158-390)||(7157675-7157907)
chr2 (49-105)||(7157618-7157674)
chr2 (129-160)||(13754182-13754213)
chr2 (131-159)||(14288658-14288686)
[»] chr8 (2 HSPs)
chr8 (98-128)||(31760002-31760032)
chr8 (132-160)||(8672724-8672752)
[»] chr6 (2 HSPs)
chr6 (57-99)||(13692625-13692667)
chr6 (131-160)||(12732404-12732433)
[»] chr5 (1 HSPs)
chr5 (131-160)||(6754158-6754187)
[»] chr7 (1 HSPs)
chr7 (129-161)||(42841850-42841882)
[»] chr3 (1 HSPs)
chr3 (63-99)||(31126481-31126517)
[»] chr1 (1 HSPs)
chr1 (131-159)||(8464237-8464265)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 158 - 390
Target Start/End: Original strand, 7157675 - 7157907
Alignment:
Q  158 taaagtcatagtgtgttgattttgggatgaacatgtaagttatgcgcatagaaaactacactacacataaaccaacctccctcacttcactacacgtaaa 257  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7157675 taaagtcatagtgtcttgattttgggatgaacatgtaagttatgcgcatagaaaactacactacacataaaccaacctccctcacttcactacacgtaaa 7157774  T
Q  258 ccaaaatctagtgtaatctattcccccaaatgtgaccttactccacatccttggaggttacaattcccttgatctcagacacagattcttatcacaaagt 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7157775 ccaaaatctagtgtaatctattcccccaaatgtgaccttactccacatccttggaggttacaattcccttgatctcagacacagattcttatcacaaagt 7157874  T
Q  358 cgtgcaaccacgtcattctttctttttcattct 390  Q
    ||||||||||| |||||||||||||||||||||    
T  7157875 cgtgcaaccacatcattctttctttttcattct 7157907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 7157618 - 7157674
Alignment:
Q  49 ttataaattcatctgctataatctaacttatcaattatctgctattttttagcaaat 105  Q
    ||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  7157618 ttataaattcatccgctataatctaacttatcaactatctgttattttttagcaaat 7157674  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 160
Target Start/End: Original strand, 13754182 - 13754213
Alignment:
Q  129 aagtgacaattaaaaaggaacggaagtagtaa 160  Q
    ||||||||||||||||||||||||||||||||    
T  13754182 aagtgacaattaaaaaggaacggaagtagtaa 13754213  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 159
Target Start/End: Original strand, 14288658 - 14288686
Alignment:
Q  131 gtgacaattaaaaaggaacggaagtagta 159  Q
    |||||||||||||||||||||||||||||    
T  14288658 gtgacaattaaaaaggaacggaagtagta 14288686  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 128
Target Start/End: Original strand, 31760002 - 31760032
Alignment:
Q  98 tagcaaatactccctccgttcctttttaatt 128  Q
    |||||||||||||||||||||||||||||||    
T  31760002 tagcaaatactccctccgttcctttttaatt 31760032  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 8672724 - 8672752
Alignment:
Q  132 tgacaattaaaaaggaacggaagtagtaa 160  Q
    |||||||||||||||||||||||||||||    
T  8672724 tgacaattaaaaaggaacggaagtagtaa 8672752  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 13692625 - 13692667
Alignment:
Q  57 tcatctgctataatctaacttatcaattatctgctatttttta 99  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||    
T  13692625 tcatccgctataaactaacttatcaattatccgctatttttta 13692667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 160
Target Start/End: Original strand, 12732404 - 12732433
Alignment:
Q  131 gtgacaattaaaaaggaacggaagtagtaa 160  Q
    ||||||||||||||||||||||||||||||    
T  12732404 gtgacaattaaaaaggaacggaagtagtaa 12732433  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 160
Target Start/End: Complemental strand, 6754187 - 6754158
Alignment:
Q  131 gtgacaattaaaaaggaacggaagtagtaa 160  Q
    ||||||||||||||||||||||||||||||    
T  6754187 gtgacaattaaaaaggaacggaagtagtaa 6754158  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 42841882 - 42841850
Alignment:
Q  129 aagtgacaattaaaaaggaacggaagtagtaaa 161  Q
    |||||||||||||||||||||||| ||||||||    
T  42841882 aagtgacaattaaaaaggaacggatgtagtaaa 42841850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 31126481 - 31126517
Alignment:
Q  63 gctataatctaacttatcaattatctgctatttttta 99  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  31126481 gctataagctaacttatcaattatttgctatttttta 31126517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 159
Target Start/End: Complemental strand, 8464265 - 8464237
Alignment:
Q  131 gtgacaattaaaaaggaacggaagtagta 159  Q
    |||||||||||||||||||||||||||||    
T  8464265 gtgacaattaaaaaggaacggaagtagta 8464237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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