View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_low_1 (Length: 750)
Name: NF1566_low_1
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 615; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 13 - 734
Target Start/End: Original strand, 7007084 - 7007814
Alignment:
| Q |
13 |
aatatgatgtatttcaagtaatgttatgttagttaggttcttgaattagattatgtaagtgtaatgtaaactatgctagagagatcaatatgtgcctatg |
112 |
Q |
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| T |
7007084 |
aatatgatgtatttcaagtaatgttatgttagttaggttcttgaattagattatgtaagtgtaatgtaaactatgctagagagatcaatatgtgcctatg |
7007183 |
T |
|
| Q |
113 |
tttggattctagtgtgaaatgtttgatgaatcttaaataaaattgctttggtctcaaatttatattattggtgatttgtagtgtttgagtctgaacatga |
212 |
Q |
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| T |
7007184 |
tttggattctagtgtgaaatgtttgatgaatcttaaataaaattgctttggtctcaaatttatattattggtgatttgtagtgtttgagtctgaacatga |
7007283 |
T |
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| Q |
213 |
tttttagactaaaatttattgttgaactcacttcgatgtaaatatgtattcaaacataatgagtcattttagttcaactcgctttcaaatnnnnnnnnnt |
312 |
Q |
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| T |
7007284 |
tttttagattaaaatttattgttgaactcacttcgacctaaatatgtattcaaacataatgagtcattttagttcaactcactttcaagtaaaaaaaaaa |
7007383 |
T |
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| Q |
313 |
--------tttactcaaaatcaattttgatcactgcataatcaaatatgcacattgtcatttcatcaatgtcaagcaaggcactaagaatatgaaatggt |
404 |
Q |
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| T |
7007384 |
aaaaaaaatttactcaaaatcaattttgatcaccgcataatcaaatatgcacattgtcatttcatcaatgtcaagcaaggcactaagaatatgaaatggt |
7007483 |
T |
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| Q |
405 |
tcatataagcatgattaccggtgtgcattgcacaagatttctctaatattttgaaagaagatttctctatttaattaatttaaactttatatcttaatat |
504 |
Q |
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| T |
7007484 |
tcatgtaagcatgattatcgatgtgcattgcacaagatttctctgatattttgaaagaagatttctctatttaattaatttaaactttatatcttaatat |
7007583 |
T |
|
| Q |
505 |
gattgttattgagttgaatctttcggacgactttttgcaaataaaataagtgtacagatccgatattgtattatctttttaatattatgcagaagtttag |
604 |
Q |
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| T |
7007584 |
gattgttattgagttgaatctttcggacgactttttgcaaataaaataagtgtacagatccgatattgtattatctttttaatattatgcagaagtttag |
7007683 |
T |
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| Q |
605 |
aggaatagtctagaggtaggaatagtttagattttttgacatgtaaactacgaaact-gttagcgcacttctaaacagttctggtaacatgttttgacag |
703 |
Q |
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| T |
7007684 |
aggaatagtctagagttaggaatagtttagattttttgacatgtaaactacgaaactcgttagcgcacttctaaatagttctggtaacatgttttgacag |
7007783 |
T |
|
| Q |
704 |
ctcaaacgaaaggtgtatgagagggtgaggt |
734 |
Q |
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| T |
7007784 |
ctcaaacgaaaggtgtatgagagggtgaggt |
7007814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 506 - 633
Target Start/End: Original strand, 7013903 - 7014030
Alignment:
| Q |
506 |
attgttattgagttgaatctttcggacgactttttgcaaataaaataagtgtacagatccgatattgtattatctttttaatattatgcagaagtttaga |
605 |
Q |
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| T |
7013903 |
attgttatttagatggatcttttcgacgactttttgcaaataaaataagtttacagatcaaatcttgtactatccttttaatactctgcagaagtttata |
7014002 |
T |
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| Q |
606 |
ggaatagtctagaggtaggaatagttta |
633 |
Q |
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| T |
7014003 |
ggaataatctaaagttatgaatagttta |
7014030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 7013493 - 7013558
Alignment:
| Q |
50 |
ttcttgaattagattatgtaagtgtaatgtaaactatgctagagagatcaatatgtgcctatgtttgg |
117 |
Q |
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| T |
7013493 |
ttcttcaattaaattatgtaagtttaatgtaacctgtgctacagagatcaata--tgcctatgtttgg |
7013558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 686 - 734
Target Start/End: Original strand, 7015202 - 7015250
Alignment:
| Q |
686 |
ggtaacatgttttgacagctcaaacgaaaggtgtatgagagggtgaggt |
734 |
Q |
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| T |
7015202 |
ggtaacatgttttcacagctcaaacgaaaggtgtaatagcgggtgaggt |
7015250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 7013674 - 7013747
Alignment:
| Q |
206 |
aacatgatttttagactaaaatttattgttgaactcacttcgatgtaaatatgtattcaaacataatgagtcattt |
281 |
Q |
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| T |
7013674 |
aacatgatttttagactaaaatttattgtt-aactca-ttttatgtaaatgtgtatctaaatataatgagtgattt |
7013747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 1233325 - 1233385
Alignment:
| Q |
185 |
gatttgtagtgtttgagtctgaacatgatttttagactaaaatttattgttgaactcactt |
245 |
Q |
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| T |
1233325 |
gatttgtagcttttggctctgaacatgatttttacactcaaatttattgttgaactcactt |
1233385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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