View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_low_11 (Length: 391)
Name: NF1566_low_11
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 44 - 375
Target Start/End: Complemental strand, 46727704 - 46727373
Alignment:
| Q |
44 |
gtcatattcacattttcaatcgcgattttagcgccatatatttaaattttcgggttaagcgaaaatcattttaacattttccaaattaaattaaactttt |
143 |
Q |
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| T |
46727704 |
gtcatattcacattttcaatcgcgattttagcgccatatatttaaattttcaggttaagcgaaaattattttaacattttccaaattaaattaaactttt |
46727605 |
T |
|
| Q |
144 |
cgttttcgcgcacaacgcagaacagaaaagcaccttcatcttcttcctcacagcgttgaaccagaacccaaaataaaaaatcgaataatttatgaaatgg |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46727604 |
cgttttcgcgcacaacgcagaacagaaaagcaccttcatcttcttcctcacagcgttgaaccagaacccaaaataaaaaatcgaataatttatgaaatgg |
46727505 |
T |
|
| Q |
244 |
aatccaataaccatttcaatttcgaagagtatgaggtattcaaaattcctaaccaatcaattttctttccaatctcaataattcttattctctcaatttg |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46727504 |
aatccaataaccatttcaatttcgaagagtatgaggtattcaaaattcgtaaccaatcaattttctttccaatctcaataattcttattctctcaatttg |
46727405 |
T |
|
| Q |
344 |
attttttagggatttgattgggaagcagctgt |
375 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
46727404 |
attttttagggatttgattgggaagcagctgt |
46727373 |
T |
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