View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_low_20 (Length: 305)
Name: NF1566_low_20
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 8457486 - 8457209
Alignment:
| Q |
18 |
gatattgggaaacccgtggaaaatggccccagtgtttcgattaccctgaaataaacaacacaaagatacaacaggaggaacatgggattcaaattcgaat |
117 |
Q |
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| T |
8457486 |
gatattgggaaacccgtggaaaatggccccagtgtttcgattaccctgaaataaacaacacaaagatacaacaggaggaacatgggattcaaattcgaat |
8457387 |
T |
|
| Q |
118 |
aaaatgaaaatatatttgaatgtatcatatatgttaccagtccaccagtagatgatgttacagcacgttcatcccacggtaatggaattccatcaaaacg |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457386 |
aaaatgaaaatatatttggatgtatcatatatgttaccagtccaccagtagatgatgttacagcacgttcatcccacggtaatggaattccatcaaaacg |
8457287 |
T |
|
| Q |
218 |
attatacatccctccatgtccttgggtggtaccaacacgatgattgataactatatcagccattgctctgactctctg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8457286 |
attatacatccctccatgtccttgggtggtaccaacacgatgattgataactatatcagccattgctctgactttctg |
8457209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 6827844 - 6827925
Alignment:
| Q |
18 |
gatattgggaaacccgtggaaaatggccccagtgtttcgattaccctgaaataaacaacacaaagatacaacaggaggaaca |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||| || |||||||| |
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| T |
6827844 |
gatattgggaaacccgtggaaaatggccccagtgtttcgattaaccagaaatgaacaacgcaaagatacagcaagaggaaca |
6827925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 27964487 - 27964568
Alignment:
| Q |
18 |
gatattgggaaacccgtggaaaatggccccagtgtttcgattaccctgaaataaacaacacaaagatacaacaggaggaaca |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| | || |||||||| |
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| T |
27964487 |
gatattgggaaacccgtggaaaatggccccagtgtttcgattaacctgaaatgaacaacgcaaagatatagcaagaggaaca |
27964568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 9822300 - 9822258
Alignment:
| Q |
18 |
gatattgggaaacccgtggaaaatggccccagtgtttcgatta |
60 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9822300 |
gatatggggaaacccgtggaaaatggccccagtgtttcgatta |
9822258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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