View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_low_21 (Length: 301)
Name: NF1566_low_21
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 13975391 - 13975688
Alignment:
| Q |
1 |
cttgttggtttaaatcattatgagtctatactttggagtttgaaaatagaacacacacaaaatggggtgggacatttaacgattccctccaatnnnnnnn |
100 |
Q |
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| T |
13975391 |
cttgttggtttaaatcattatgagtctatactttggagtttgaaaatagaacccacataaaatgggatgggacatgtaacgattccctccaataaaaaag |
13975490 |
T |
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| Q |
101 |
tgaatatgtcaaagagagtgttcaaaaatgagtgttgcaagtatttgtcaagtttatatgatcaaaagttctctatgatggtccatgcaaggtagcatca |
200 |
Q |
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| T |
13975491 |
tgaat--gttaaagagagtgttcaaaaatgagtgttgcatgtatttgtcaagtttatatgatcaaaaattctctatgatggtccatgcaaggttgcatca |
13975588 |
T |
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| Q |
201 |
ttatcttattatttaaagatgacgtccaannnnnnnnnagagtgcacaaaagaatagaatagttgttgttagggttaaaattccaaagctccattcagaa |
300 |
Q |
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| T |
13975589 |
ttatcttattatttaaagatgacgtccaa-ttttttttagagtgcacaaaagaatagaatagttgttgttagggttaaaattcaaaagctccattcagaa |
13975687 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 55452065 - 55452097
Alignment:
| Q |
5 |
ttggtttaaatcattatgagtctatactttgga |
37 |
Q |
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| T |
55452065 |
ttggtttaaatcattatgagtctacactttgga |
55452097 |
T |
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