View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_low_27 (Length: 263)
Name: NF1566_low_27
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 8554323 - 8554160
Alignment:
| Q |
17 |
aagcattaaaaataaaactttaatttatgaagtgaaagtaacacttgtatattgaatcataactagttaatgcttctgtagattattaaaactctatatt |
116 |
Q |
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| T |
8554323 |
aagcattaaaaataaaactttaatttatgaagtgaaagtaacacttgtatattgaatcataactagttaatgcttctgtagattattaaaactctatatt |
8554224 |
T |
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| Q |
117 |
ttaggtatagctttagacatgtcacatatatttattttcttctgcaatatgttgaaatatcaag |
180 |
Q |
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| T |
8554223 |
ttaggtatagctttagacatgtcacatatatttattttcttctgcaaaatgttgaaatatcaag |
8554160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 8554136 - 8554076
Alignment:
| Q |
203 |
cttaggagtgtacaatttcagctggatgtatcagcagtcaagttggaagtaccataaaccc |
263 |
Q |
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| T |
8554136 |
cttaggagtgtacaatttcagctggatgtagcagcagtcaagttggaagtaccataaaccc |
8554076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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