View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1566_low_31 (Length: 244)
Name: NF1566_low_31
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1566_low_31 |
| |
|
Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 5752600 - 5752832
Alignment:
Q |
1 |
aacgagactacttcggtgctcatacatatgaaagggttgatatcgaggggtcgtaccatactaaatggttcaaacttgccaagaagttgaggatttagat |
100 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| |||||||||||| |
|
|
T |
5752600 |
aacgagactacttcggtgctcatacatatgaaagggttgatatcgaggggtcgtaccatactgaatggttcaagcttgccaagcagtcgaggatttagat |
5752699 |
T |
|
Q |
101 |
tactgtatttgaactcttcaagattcctaataaatgtaatgttttttaatcaagactgtatgctgagttgagcttacatagctgcaattcggtgaagttt |
200 |
Q |
|
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
T |
5752700 |
tactgtgtttgaactcttcaagattcctaataaatgtaatgttttttactcaagactgtatactgagttgagcttacatagctgcaatgcggtgaagttt |
5752799 |
T |
|
Q |
201 |
atatataccattttgtactactcaattacttgg |
233 |
Q |
|
|
|| ||||||||| ||||||||| |||||||||| |
|
|
T |
5752800 |
atttataccattctgtactacttaattacttgg |
5752832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 5756533 - 5756725
Alignment:
Q |
20 |
tcatacatatgaaagggttgatatcgaggggtcgtaccatactaaatggttcaaacttgccaagaagttgaggatttagattactgtatttgaactcttc |
119 |
Q |
|
|
||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||| ||| ||| ||||||||||||| ||||| ||||||||||| |
|
|
T |
5756533 |
tcatacatatgaaagggttgatatcgacgggtcttaccatactgaatggttcaagcttttaaagcagtcgaggatttagatttctgtagttgaactcttc |
5756632 |
T |
|
Q |
120 |
aagattcctaataaatgtaatgttttttaatcaagactgtatgctgagttgagcttacatagctgcaattcggtgaagtttatatataccatt |
212 |
Q |
|
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
T |
5756633 |
aagattcctaataaatgtaatgttttttactcaagactgtatgctgagttgagcttacatagctgcaatgcggtgaagtttatatataccatt |
5756725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 12380 times since January 2019
Visitors: 8218