View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_low_36 (Length: 238)
Name: NF1566_low_36
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 26954931 - 26954721
Alignment:
| Q |
18 |
atttagactacaccaaggtgaacaaatttaatatcaaattatgaaatcacactcgtaaaagcaatgaccaacaataattgaaactccaattccaacagtt |
117 |
Q |
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| T |
26954931 |
atttagactacaccaaggtgaacaaatttaatatcaaattatgaaatcacactcttaaaagcaatgaccaacaataattgaaactccaattccaacagtt |
26954832 |
T |
|
| Q |
118 |
gattaccgcgcgcactatgaatgaagtcttccctttttctttaaataaccaaatatcaattcatacttactcctcttgtctctattgcaatttgcaatag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26954831 |
gattaccgcgcgcactatgaatgaagtcttccctttttctttaaataaccaaatatcaattcatacttactcctcttgtctctattgcaatttgcaataa |
26954732 |
T |
|
| Q |
218 |
tctttttcttc |
228 |
Q |
| |
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||||||||||| |
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|
| T |
26954731 |
tctttttcttc |
26954721 |
T |
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