View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_low_4 (Length: 569)
Name: NF1566_low_4
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Complemental strand, 33654259 - 33653703
Alignment:
| Q |
1 |
tagctcgggaccattaacaatggtggtgaatgaggatgatgctgtttgtgatgttattgagaaaagtcttaaatcttatgcacgtcaagggagattaccc |
100 |
Q |
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| T |
33654259 |
tagctcgggaccgttaacaatggtggtgaatgaggatgatgctgtttgtgatgttattgagaaaagtctcaaatcttatgcacgtcaagggagattaccc |
33654160 |
T |
|
| Q |
101 |
attttaggatctgatgtcacaaattttgatatttactgctcaaatgatgtctctgatggtaaatttgtcctttatgatttacttttcttcnnnnnnnn-- |
198 |
Q |
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| T |
33654159 |
attttaggatctgatgtcacaaattttgatatttactgctcaaatgatgtctctgatggtaagtttgtcctttatgatttacttttcttctttttttttt |
33654060 |
T |
|
| Q |
199 |
---cttcaattttcaattttcacactttgatattcattattcaataatttaagttgatcattaagtgtttcaatcaatcaagaatcaaattttgatgctt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33654059 |
ttccttcaattttcaattttcacactttgatattcattattcaataatttaagttgatcagtaagtgtttcaatcaatcaagaatcaaattttgatgctt |
33653960 |
T |
|
| Q |
296 |
tcaatctattcgatatttacttaaactcatggttgatttgagatattagatttgatgcatgtagttttattatataattacgtataattggttttgtttc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33653959 |
tcaatctattcgatatttacttaaactcatggttgatttgagatattagatttgatgcatgtagttttattatataattacgtataattggttttgtttc |
33653860 |
T |
|
| Q |
396 |
tcggtcatttcggatcttgaaatcccaaattgatttttaaaaagttggaattagcaaaatgctgaaatcattttttaaattgattattctccatcacatt |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33653859 |
tcggtcatttcggatcttgaaatcccaaattgatttttaaatagttggaattagcaaaatgctgaaatcattttttaaattgattattctccatcacatt |
33653760 |
T |
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| Q |
496 |
gatcgttttagannnnnnnngttaaattgtttagtgactaaattcacacactttatg |
552 |
Q |
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||| |||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
33653759 |
gattgtttaagatttttttttttaaattgtttagtgactaaattcacacactttatg |
33653703 |
T |
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