View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571-INSERTION-1 (Length: 540)
Name: NF1571-INSERTION-1
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571-INSERTION-1 |
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| [»] scaffold1019 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 8 - 523
Target Start/End: Original strand, 17831102 - 17831614
Alignment:
| Q |
8 |
gaaaactgctgctttgatctctgcttgtgtcgggagcatggtaagcaatttgtttgtgttgtcatcaataagctttggaataacttcttcgacaagaacc |
107 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17831102 |
gaaaactgttgctttgatctctgcttgtgtcgggagcatggtaagcaatttgtttgtgttgtcatcaataagctttggaataacttcttcgacaagaacc |
17831201 |
T |
|
| Q |
108 |
tgttcctgcaaaacatggttagtacaaaataagtttttgaaataatcaacaatgtgttcagatatttgttgtgggtcactgatcaaatcctcaccaactc |
207 |
Q |
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| T |
17831202 |
tgttcctgcaaaacatggttagtacaaaataagtttttgaaataatcaacaatgtgttcagatatttgttgtgggtcactgatcaaatcctcaccaactc |
17831301 |
T |
|
| Q |
208 |
tcaaacaagtaannnnnnnngtcttgtttttgatttgtgaaagtctgtgaaaatagccggtgtttctatcaccctccaaatgccacttaactttagattt |
307 |
Q |
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| T |
17831302 |
tcaaactagtaattttttttgtcttatttttgatttgtgaaagtctgtgaaaatagccagtgtttctatcaccctccaaatgccacttaactttagattt |
17831401 |
T |
|
| Q |
308 |
ttctctccaaaagctttcttgtctctctaaggctatgtttaggtcaatttgggcggtttgttcgagatttagaagattatatgttgggccagtagtttga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17831402 |
ttctctccaaaagctttcttgtctctctaaggctatgtttaggtcaatttgggcggtttgttcgagatttagaagattatctgttgggccagtagtttga |
17831501 |
T |
|
| Q |
408 |
atttggttttggatcatatggttaagggtgacctcggcattattaacatgctggtggacatttccatatacttctttgttccaaacttttagctttgttt |
507 |
Q |
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| T |
17831502 |
atttggttttgg---atatggttaagggtgacctcggcattattaacatgctggtggacattttcatatacttctttgttccaaacttttagctttgttt |
17831598 |
T |
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| Q |
508 |
tcaagagtttcagctt |
523 |
Q |
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| T |
17831599 |
tcaagagtttcagctt |
17831614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 12 - 421
Target Start/End: Original strand, 11179172 - 11179581
Alignment:
| Q |
12 |
actgctgctttgatctctgcttgtgtcgggagcatggtaagcaatttgtttgtgttgtcatcaataagctttggaataacttcttcgacaagaacctgtt |
111 |
Q |
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| T |
11179172 |
actgcagctttgatctcagcatgtgtggggagcatagttagcagattattggtgttgtcgtcaatcaaatttggaatgacctcttccacaagcaatgaat |
11179271 |
T |
|
| Q |
112 |
cctgcaaaacatggttagtacaaaataagtttttgaaataatcaacaatgtgttcagatatttgttgtgggtcactgatcaaatcctcaccaactctcaa |
211 |
Q |
| |
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| T |
11179272 |
cctgcaaaatagggttagtacaaaacaaattttcaaaataattgacaatgtgttccgaaatttgattagtatctgtaagtaaattctcatcaactctcaa |
11179371 |
T |
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| Q |
212 |
acaagtaannnnnnnngtcttgtttttgatttgtgaaagtctgtgaaaatagccggtgtttctatcaccctccaaatgccacttaactttagatttttct |
311 |
Q |
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| T |
11179372 |
gctagtaataagctttgttttgtttttgatttgagaaagtctgtgaaaatatgatgtgttcctatcaccttccacatgccacttagctttagctttctct |
11179471 |
T |
|
| Q |
312 |
ctccaaaagctttcttgtctctctaaggctatgtttaggtcaatttgggcggtttgttcgagatttagaagattatatgttgggccagtagtttgaattt |
411 |
Q |
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||| | || |||||||||||||| | ||||||||| | ||| |||| || ||| || || ||||||||| ||| ||| ||||||| |||||||| |
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| T |
11179472 |
ctctataaactttcttgtctctcaagggctatgttcatgtcgttttgtgcacttttctcaaggtttagaagagtatctgtggggccagaggtttgaatgc |
11179571 |
T |
|
| Q |
412 |
ggttttggat |
421 |
Q |
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| T |
11179572 |
ggttttggat |
11179581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 28714289 - 28714158
Alignment:
| Q |
8 |
gaaaactgctgctttgatctctgcttgtgtcgggagcatggtaagcaatttgtttgtgttgtcatcaataagctttggaataacttcttcgacaagaacc |
107 |
Q |
| |
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|||||||||||||||||| || | ||||| || ||||| || |||| | ||| |||||||| |||| ||| || |||||||||||||| |||| | |
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| T |
28714289 |
gaaaactgctgctttgatttcatcatgtgtaggtagcatagtgagcatctggttggtgttgtcttcaacaagtttgggaataacttcttctgcaagcaag |
28714190 |
T |
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| Q |
108 |
tgttcctgcaaaacatggttagtacaaaataa |
139 |
Q |
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| T |
28714189 |
tgttcctgcaataaagggttagtacaaaataa |
28714158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 16487921 - 16487790
Alignment:
| Q |
8 |
gaaaactgctgctttgatctctgcttgtgtcgggagcatggtaagcaatttgtttgtgttgtcatcaataagctttggaataacttcttcgacaagaacc |
107 |
Q |
| |
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|||||||||||||||||| || | ||||| || ||||| || |||| | ||| |||||||| |||| ||| || |||||||||||||| |||| | |
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| T |
16487921 |
gaaaactgctgctttgatttcatcatgtgtaggtagcatagtgagcatctggttggtgttgtcttcaacaagtttgggaataacttcttctgcaagcaag |
16487822 |
T |
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| Q |
108 |
tgttcctgcaaaacatggttagtacaaaataa |
139 |
Q |
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| T |
16487821 |
tgttcctgcaataaagggttagtacaaaataa |
16487790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1019 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1019
Description:
Target: scaffold1019; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 1325 - 1370
Alignment:
| Q |
100 |
caagaacctgttcctgcaaaacatggttagtacaaaataagttttt |
145 |
Q |
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| T |
1325 |
caagtacctgatcctgcaaaacaaggttagtacaaaacaagttttt |
1370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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