View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571-INSERTION-3 (Length: 614)
Name: NF1571-INSERTION-3
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571-INSERTION-3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 8 - 614
Target Start/End: Original strand, 43131954 - 43132560
Alignment:
| Q |
8 |
tgattgtcatgcaaagaccacaacctcagccgcca-aagcattgatgcaaaacagatatgttgaaacagttattcatgaaaagttgaaaagtgtaaggat |
106 |
Q |
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| T |
43131954 |
tgattgtcatgcaaagaccacaaccacagccgccacaagcattgatgcaaaacagatatgttgaaacagttattcatgaaaagttgaaaagtgtaaggat |
43132053 |
T |
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| Q |
107 |
cacatggattcatggaggcaccaatgtttctattgcaggatcatggaacaactgggagacagtgtaaataacaaatagtttacttgtannnnnnnacatc |
206 |
Q |
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| T |
43132054 |
cacatggattcatggaggcaccaatgtttctattgcaggatcatggaacaactgggagacagtgtaaataacaaatagtt-acttgtatttttttacatc |
43132152 |
T |
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| Q |
207 |
atcatcatagtaaattatatggtatcatgacnnnnnnnnacctttgttttgtagggaggccttgctaagagttggtcaacattttgtgattgttaaaaca |
306 |
Q |
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| T |
43132153 |
atcatcatagtaaattatttggtatcatgacttttttt-atctttgttttgtagggaggccttgctaagagtaggtcaacattttgtgattgttaaaaca |
43132251 |
T |
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| Q |
307 |
cttccaataagtatctactattaccgtttcattgtagatggacaatggacacatgctcctgagtttccatcagatcttgatgattctggttatgtctaca |
406 |
Q |
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| T |
43132252 |
cttccaataagtatctactattaccgtttcattgtagatggacaatggacacatgctcctgagtttccatcagatcttgatgattctggttatgtctaca |
43132351 |
T |
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| Q |
407 |
atatattggatttgcaggtaattttttgcttagtaacatgatcatcaattcaagttagtatctatcgcgtttatagtaacatcgatattatactgtttta |
506 |
Q |
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| T |
43132352 |
atatattggatttgcaggtaattttttgcttagtaacatgatcatcaattcaagttagtatctatcgcgtttatagtaacatccatattatactgtttta |
43132451 |
T |
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| Q |
507 |
ggaatgtgtttgcttatgcttgacggagaatatgtactcggttctaaatcatcttgtccaatatagtctagcgttcaaatcctgag-aattaacgtaccc |
605 |
Q |
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| T |
43132452 |
ggaatgtgtttgcttatgcttgacggagaatatgtactcggttctaaatcatcttgtccaatatagtctagcgttcaaatcctgagaaattaacgtatcc |
43132551 |
T |
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| Q |
606 |
actaactta |
614 |
Q |
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| T |
43132552 |
actaactta |
43132560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 60 - 159
Target Start/End: Original strand, 43134718 - 43134819
Alignment:
| Q |
60 |
agatatgttgaaacagttattcatgaaaagttgaaaagtgtaaggatcacatggattcatggaggcaccaatg--tttctattgcaggatcatggaacaa |
157 |
Q |
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|||||| | |||||| | |||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
43134718 |
agatatttagaaacaatgattcatgaaaggttgaaaagtgaaaggatcgcatagattcatggaggcaccaatgtctctctattgcaggatcatggaacaa |
43134817 |
T |
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| Q |
158 |
ct |
159 |
Q |
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|| |
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| T |
43134818 |
ct |
43134819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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