View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1571-INSERTION-5 (Length: 664)
Name: NF1571-INSERTION-5
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571-INSERTION-5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 10 - 625
Target Start/End: Complemental strand, 2138354 - 2137732
Alignment:
| Q |
10 |
ttgttagatattatagatacattgtaaaaaattacgagtttgtgctcttgattttctcaatttacacaagtgatcaaaatccctaagatatacatagccg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2138354 |
ttgttagatattatagatacattgtaaaaaattacgagtttgtgctcttgattttctcaatttacacaagtgatcaaaatccctaagatatacatagccg |
2138255 |
T |
|
| Q |
110 |
taaaccctaattccattcagttaaataggacagaactagaactaggagacataaacgtagttggccgtacttgtgaaagatcacgatttgtgtaaactgg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2138254 |
taaaccctaattccattcagttaaataggacagaactagaactaggagacataaacgtagttggccgtacttgtgaaagatcacgatttgtgtaaactgg |
2138155 |
T |
|
| Q |
210 |
aaaccaggtgttctattatacatgcatgatgacactaatacgttttttaagttagaataaatcaatcatcacttattagaaaacacacacatagaaaaat |
309 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
2138154 |
aaaccaggtgttctattatgcatgcatgatgacactaatacgttttttaagttagaataaatcaatcatcgcttatttgaaaacacacacatagaaaaat |
2138055 |
T |
|
| Q |
310 |
tggtaggac-------tttcnnnnnnnattgatttattcatttcttctgctcattacagtttggtctcagtctcaccatggcggcagacaacgacaccag |
402 |
Q |
| |
|
||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2138054 |
tggcaggacttttttttttttttttttattgatttattcatttcttctgctcattacagtttggtctcagtctcaccatgacggcagacaacgacaccag |
2137955 |
T |
|
| Q |
403 |
aatcacagaactaggagctggattgaatcgcatcactgaaacagtggcaaaaaaccacttagaagtcctagctgagatagatcgacttacgaaggccttt |
502 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2137954 |
aatcacagaactagaagctggattgaatcgcatcactgaaacagtggcaaaaaaccacttagaagtcctagccgagatagatcgacttacgaaggccttt |
2137855 |
T |
|
| Q |
503 |
gagacacttcagcaagggaacacgccgtttcaagagtcatccgatgctactgtgatcaactcaaccaaacagtcggtgagatatgttaaactttatgatt |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2137854 |
gagacacttcagcaagggaacacgccgtttcaagagtcatcccatgctactgtgatcaactcaaccaaacagtcggtgagatatgttaaacttgatgatt |
2137755 |
T |
|
| Q |
603 |
tctaaaatgttatgaatttgatt |
625 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
2137754 |
tctaaaattttatgaatttgatt |
2137732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 628 - 664
Target Start/End: Complemental strand, 2137701 - 2137665
Alignment:
| Q |
628 |
attgaatttataagacatattacagttcaaaatataa |
664 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2137701 |
attgaatttataagacatattacagttcaaaatataa |
2137665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7639 times since January 2019
Visitors: 7737