View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1571_high_10 (Length: 463)

Name: NF1571_high_10
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1571_high_10
NF1571_high_10
[»] chr1 (3 HSPs)
chr1 (17-453)||(47579685-47580127)
chr1 (22-65)||(1953336-1953379)
chr1 (17-65)||(1968417-1968465)
[»] chr7 (2 HSPs)
chr7 (17-65)||(39426675-39426723)
chr7 (17-60)||(11673604-11673647)
[»] chr2 (3 HSPs)
chr2 (17-65)||(34564342-34564390)
chr2 (17-65)||(2590086-2590134)
chr2 (17-57)||(18739578-18739618)
[»] scaffold0014 (1 HSPs)
scaffold0014 (17-65)||(86622-86670)
[»] chr8 (3 HSPs)
chr8 (17-65)||(1789371-1789419)
chr8 (17-65)||(21185746-21185794)
chr8 (17-65)||(4327366-4327414)
[»] chr6 (2 HSPs)
chr6 (17-65)||(19698312-19698360)
chr6 (17-60)||(6950192-6950235)
[»] chr3 (2 HSPs)
chr3 (17-65)||(11634676-11634724)
chr3 (22-65)||(19935634-19935677)


Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 453
Target Start/End: Complemental strand, 47580127 - 47579685
Alignment:
Q  17 acaatttttaataacttttaaaatataatatcaacttaaaaataaaacactaagtgtatgtttaatgcagtaaatggtaaaatggataaaatttgtatcc 116  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47580127 acaatttttaataacttttgaaatataatatcaacttaaaaataaaacactaagtgtatgtttaatgtagtaaatggtaaaatggataaaatttgtatcc 47580028  T
Q  117 tagtcctataccaagtgcagttataagggtgattgctcatcaactttcttatatgctcaaagatgtcaagatacaccagcttctgcagaattcaacattt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  47580027 tagtcctataccaagtgcagttataagggtgattgctcatcaactttcttatatgctcagatatgtcaagatacaccagcttctgcagaattcaacattt 47579928  T
Q  217 tcaaggagttggatgagcaatcacatacatatctaaagaaggccgtggaaggaaatat------tccatttccattgcatacaacgtagtctttactgtt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||    
T  47579927 tcaaggagttggatgagcaatcacatacatatctaaagaaggccgtggaaggaaatattccaattccatttccattgcatacaacgtagtctttactgtt 47579828  T
Q  311 atgattcgtgttttagattttacacaagtagaaaccattgttggggatcagggtatttctacaaattgtgagtaaaatacacaataatcaagcaactttt 410  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47579827 atgactcgtgttttagattttacacaagaagaaaccattgttggggatcagggtatttctacaaattgtgagtaaaatacacaataatcaagcaactttt 47579728  T
Q  411 attatgaagctaaatttagttattaaacttacatacgattcat 453  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  47579727 attatgaagctaaatttagttattaaacttacatacgattcat 47579685  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 1953379 - 1953336
Alignment:
Q  22 ttttaataacttttaaaatataatatcaacttaaaaataaaaca 65  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  1953379 ttttaataacttttaaaatataatatcaacttaaaaatacaaca 1953336  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 1968465 - 1968417
Alignment:
Q  17 acaatttttaataacttttaaaatataatatcaacttaaaaataaaaca 65  Q
    |||| |||||||||||||| |||||||||||||||||||||||| ||||    
T  1968465 acaacttttaataacttttgaaatataatatcaacttaaaaatacaaca 1968417  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 39426675 - 39426723
Alignment:
Q  17 acaatttttaataacttttaaaatataatatcaacttaaaaataaaaca 65  Q
    |||| |||||||||||||| |||||||||||||||||||||||| ||||    
T  39426675 acaacttttaataacttttgaaatataatatcaacttaaaaatacaaca 39426723  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 11673647 - 11673604
Alignment:
Q  17 acaatttttaataacttttaaaatataatatcaacttaaaaata 60  Q
    |||| |||||||||||||| |||||||||||||||| |||||||    
T  11673647 acaaattttaataacttttgaaatataatatcaactcaaaaata 11673604  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 34564390 - 34564342
Alignment:
Q  17 acaatttttaataacttttaaaatataatatcaacttaaaaataaaaca 65  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  34564390 acaacttttaataacttttaaaatataatatcaactcaaaaatacaaca 34564342  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 2590134 - 2590086
Alignment:
Q  17 acaatttttaataacttttaaaatataatatcaacttaaaaataaaaca 65  Q
    |||| |||||||||||||| |||||||||||||||| ||||||| ||||    
T  2590134 acaacttttaataacttttgaaatataatatcaactcaaaaatacaaca 2590086  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 18739578 - 18739618
Alignment:
Q  17 acaatttttaataacttttaaaatataatatcaacttaaaa 57  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  18739578 acaacttttaataacttttaaaatataatatcaactcaaaa 18739618  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 86670 - 86622
Alignment:
Q  17 acaatttttaataacttttaaaatataatatcaacttaaaaataaaaca 65  Q
    |||| |||||||||||||| |||||||||||||||| ||||||| ||||    
T  86670 acaacttttaataacttttgaaatataatatcaactcaaaaatacaaca 86622  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 1789371 - 1789419
Alignment:
Q  17 acaatttttaataacttttaaaatataatatcaacttaaaaataaaaca 65  Q
    |||| |||||||||||||| |||||||||||||||| ||||||| ||||    
T  1789371 acaacttttaataacttttgaaatataatatcaactcaaaaatacaaca 1789419  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 21185746 - 21185794
Alignment:
Q  17 acaatttttaataacttttaaaatataatatcaacttaaaaataaaaca 65  Q
    |||| |||||||||||||| |||||||||||||||| ||||||| ||||    
T  21185746 acaacttttaataacttttgaaatataatatcaactcaaaaatacaaca 21185794  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 4327366 - 4327414
Alignment:
Q  17 acaatttttaataacttttaaaatataatatcaacttaaaaataaaaca 65  Q
    |||| |||||||||| | | |||||||||||||||||||||||| ||||    
T  4327366 acaacttttaataacctctgaaatataatatcaacttaaaaatacaaca 4327414  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 19698312 - 19698360
Alignment:
Q  17 acaatttttaataacttttaaaatataatatcaacttaaaaataaaaca 65  Q
    |||| |||||||||||||| |||||||||||||||| ||||||| ||||    
T  19698312 acaacttttaataacttttgaaatataatatcaactcaaaaatacaaca 19698360  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 6950192 - 6950235
Alignment:
Q  17 acaatttttaataacttttaaaatataatatcaacttaaaaata 60  Q
    |||| |||||||||||||| |||||||||||||||| |||||||    
T  6950192 acaacttttaataacttttgaaatataatatcaactcaaaaata 6950235  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 11634676 - 11634724
Alignment:
Q  17 acaatttttaataacttttaaaatataatatcaacttaaaaataaaaca 65  Q
    |||| |||||||||||||| |||||||||||||||| ||||||| ||||    
T  11634676 acaacttttaataacttttgaaatataatatcaactcaaaaatacaaca 11634724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 19935634 - 19935677
Alignment:
Q  22 ttttaataacttttaaaatataatatcaacttaaaaataaaaca 65  Q
    |||||||||||||| |||||||||||||||| ||||||| ||||    
T  19935634 ttttaataacttttgaaatataatatcaactcaaaaatacaaca 19935677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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