View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_13 (Length: 441)
Name: NF1571_high_13
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 48887398 - 48886973
Alignment:
| Q |
1 |
cagtggaacctgaatcccaccttcaaatgcaaagtgttttaaacattaaaaaagggatcaggtggtaaaaaa-gagagaggatggaagcacattcaccca |
99 |
Q |
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| T |
48887398 |
cagtggaacctgaatcccaccttcaaatgcaaaatgttttaaacattaaaaaagggatcaggtggtaaaaaaagagagaggatggaagcacattcaccca |
48887299 |
T |
|
| Q |
100 |
tgcatgcaattagtcaattcttccaagtaaagaggaattaatctgacaatatggtaatttaaattcaagccttactgcaaaaaatatatttaaaatactc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48887298 |
tgcatgcaattagtcaattcttccaagtaaagaggaattaatctgacaatatggtaatttaaattcaagccttactgcaaaaaatatatttaaaatactc |
48887199 |
T |
|
| Q |
200 |
aaacaagttaggaaatcaaatggttacattacatccatctaaatcatacagggtagacggagacatgataactgatgtatttagctctgctaagtggtgg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
48887198 |
aaacaagttaggaaatcaaatggttacattacatccatctaaatcatacagggtagacggagacatgatagctgatgtgtttagctctgctaagtggtgg |
48887099 |
T |
|
| Q |
300 |
aaaccttagatgccatagagtagttgaaatttaaaaatgtaattaaccagcatccatagaattacaagnnnnnnnatcaaaagaatttccatacaatttc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48887098 |
aaaccttagatgccatagagtagttgaaatttaaaaatgtaattaaccagcatccatagaattacaagtttttttatcaaaagaatttccatacaatttc |
48886999 |
T |
|
| Q |
400 |
cttggtcacatgagcaatacaatatt |
425 |
Q |
| |
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|
| T |
48886998 |
cttggtcacatgagcaatacaatatt |
48886973 |
T |
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