View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_16 (Length: 428)
Name: NF1571_high_16
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Original strand, 7198152 - 7198551
Alignment:
| Q |
13 |
taggggtccatggtccaaaaggtctaaacaagtgttgtcaatcgcagatcatagaaaagatcaattcattcaaattccactacgcaacaatgctatagtg |
112 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7198152 |
taggggttcatggtccaaaaggtctaaacaagtgttgtcaatcgcagatcatagaaaagatcaattcattcaaattccactacgcaacaatgctatagtg |
7198251 |
T |
|
| Q |
113 |
ccgttataactgttattgacaacattttgttagtgtatggcggaacaacactggtttaagccaattgattttcatcccactttagtcttctctgttgtta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7198252 |
ccgttataactgttattgacaacattttgttagtgtatggcggatcaacactggtttaagccatttgattttcatcccactttagtcttctctgttgtta |
7198351 |
T |
|
| Q |
213 |
tccgatgtggacttattgcatatgcttatgtaggtaatgagttgagtggtacaggcgttcgtgcatcagttgacgttgcacagtatgggaaagacgtgat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7198352 |
tccgatgtggacttattgcatatgcttatgtaggtaatgagttgagtggtacaggcgttcgtgcatcagttgacgttgcacagtatgggaaagacgtgat |
7198451 |
T |
|
| Q |
313 |
aaaccttaaacgaattcttgatgagttatacaagaactcgaggttcaaacccttacttgtagcacctgatggaagttatgataaggaatggtacaataag |
412 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7198452 |
aaaccttaaacgaattctagatgagttatacaagaactcgaggttcaaacccttacttgtagcacctgatggaagttatgataaggaatggtacaataag |
7198551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 23 - 412
Target Start/End: Original strand, 7205087 - 7205472
Alignment:
| Q |
23 |
tggtccaaaaggtctaaacaagtgttgtcaatcgcagatcatagaaaagatcaattcattcaaattccactacgcaacaatgctatagtgccgttataac |
122 |
Q |
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| T |
7205087 |
tggtccaaaaggtctaaacaagtgttgtcaatcgtggatcatagaaaatagtgatt-atttaaattc---tacgcaacaatgttgaagtcccgctgtaac |
7205182 |
T |
|
| Q |
123 |
tgttattgacaacattttgttagtgtatggcggaacaacactggtttaagccaattgattttcatcccactttagtcttctctgttgttatccgatgtgg |
222 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||||| ||||||| |
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| T |
7205183 |
tgttattgacaacattttgttagcgtatggcggagcaacactggtctaagccatttgatcttcatcccactttagtcttctttgttgttatcagatgtgg |
7205282 |
T |
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| Q |
223 |
acttattgcatatgcttatgtaggtaatgagttgagtggtacaggcgttcgtgcatcagttgacgttgcacagtatgggaaagacgtgataaaccttaaa |
322 |
Q |
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| T |
7205283 |
acttattgcatatgcttatgtaggtaatgagttgagtggtacaggcgttggtgcatcagttgtcgttgcacagtatgggaaagacgtgataaaccttaaa |
7205382 |
T |
|
| Q |
323 |
cgaattcttgatgagttatacaagaactcgaggttcaaacccttacttgtagcacctgatggaagttatgataaggaatggtacaataag |
412 |
Q |
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| T |
7205383 |
cgaattctagatgagttatacaagaactcgaggttcaaacccttacttgtagcacctgatggaagttatgataaggaatggtacaataag |
7205472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 156 - 412
Target Start/End: Original strand, 7211818 - 7212074
Alignment:
| Q |
156 |
aacaacactggtttaagccaattgattttcatcccactttagtcttctctgttgttatccgatgtggacttattgcatatgcttatgtaggtaatgagtt |
255 |
Q |
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|||||||||||| ||| || |||| ||||||| ||||||||||| ||||||||| | ||||| |||||||||||||||||||||||||||||||||| |
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| T |
7211818 |
aacaacactggtctaaaccgattggacttcatcctgctttagtcttccctgttgttacctgatgttgacttattgcatatgcttatgtaggtaatgagtt |
7211917 |
T |
|
| Q |
256 |
gagtggtacaggcgttcgtgcatcagttgacgttgcacagtatgggaaagacgtgataaaccttaaacgaattcttgatgagttatacaagaactcgagg |
355 |
Q |
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|||||| |||| || |||||||||| | ||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||| |
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| T |
7211918 |
aagtggtgaaggcattggtgcatcagtcggtgttgcacggtatgggaaagacgtgataaaacttaaacgaattctagatgtgttatacaagaacttaagg |
7212017 |
T |
|
| Q |
356 |
ttcaaacccttacttgtagcacctgatggaagttatgataaggaatggtacaataag |
412 |
Q |
| |
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|||||||||| ||||||||||||| |||| ||||| ||||||||||||| |||| |
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| T |
7212018 |
ttcaaaccctcgcttgtagcacctggtggattttatgtaaaggaatggtacactaag |
7212074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 7211638 - 7211782
Alignment:
| Q |
14 |
aggggtccatggtccaaaaggtctaaacaagtgttgtcaatcgcagatcatagaaaagatcaattcattcaaattccactacgcaacaatgctatagtgc |
113 |
Q |
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|||||| |||||||||||||||||||||| ||||||| |||||| ||||| | |||| | |||||||||||||||||||||||||| |||||| |||| |
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| T |
7211638 |
aggggttcatggtccaaaaggtctaaaca-gtgttgtaaatcgcggatcacataaaatagtgattcattcaaattccactacgcaacagtgctattgtgc |
7211736 |
T |
|
| Q |
114 |
cgttataactgttat-tgacaacattttgttagtgtatggcggaac |
158 |
Q |
| |
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|| ||||| |||||| ||| ||||||||| ||| |||||||||||| |
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| T |
7211737 |
cgctataaatgttatctgataacattttgctagcgtatggcggaac |
7211782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 10354779 - 10354827
Alignment:
| Q |
81 |
ttcaaattccactacgcaacaatgctatagtgccgttataactgttatt |
129 |
Q |
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||||||||||||||||||| | |||||||| |||| ||||||||||||| |
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| T |
10354779 |
ttcaaattccactacgcaatagtgctatagagccgctataactgttatt |
10354827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 45371058 - 45371094
Alignment:
| Q |
84 |
aaattccactacgcaacaatgctatagtgccgttata |
120 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||| |
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| T |
45371058 |
aaattccactacacaacagtgctatagtgccgttata |
45371094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 30876585 - 30876653
Alignment:
| Q |
42 |
aagtgttgtcaatcgcagatcatagaaaagatcaattcattcaaattccactacgcaacaatgctatag |
110 |
Q |
| |
|
|||||||||||||||||||||| |||||| | | ||| ||||||||| | ||| || |||||||||||| |
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| T |
30876585 |
aagtgttgtcaatcgcagatcacagaaaatagcgatttattcaaattacgctatgctacaatgctatag |
30876653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 2457357 - 2457281
Alignment:
| Q |
44 |
gtgttgtcaatcgcagatcatagaaaagatcaattcattcaaattccactacgcaacaatgctatagtgccgttata |
120 |
Q |
| |
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||||||||||||||||||| |||||| | || || |||||||||||| || ||| |||||||||| || |||||| |
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| T |
2457357 |
gtgttgtcaatcgcagatcgcagaaaatagcagtttgttcaaattccaccacacaataatgctatagagctgttata |
2457281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 20868473 - 20868553
Alignment:
| Q |
43 |
agtgttgtcaatcgcagatcatagaaaagatcaattcattcaaattccactacgcaacaatgctatagtgccgttataact |
123 |
Q |
| |
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|||||||||||||||| ||| |||||| | ||||| ||||||||| |||| || ||||||||| || ||||||||||| |
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|
| T |
20868473 |
agtgttgtcaatcgcaaatcgcagaaaatagcaatttcttcaaattcaactaggctacaatgctacagccccgttataact |
20868553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 110
Target Start/End: Original strand, 30617226 - 30617255
Alignment:
| Q |
81 |
ttcaaattccactacgcaacaatgctatag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
30617226 |
ttcaaattccactacgcaacaatgctatag |
30617255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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