View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_17 (Length: 409)
Name: NF1571_high_17
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Original strand, 22434517 - 22434901
Alignment:
| Q |
11 |
cagagacagaaagaagcaatgctgatataatagtccacttgaatctgaaatccactgatgataaccatcacctgtagttcacaccaaattatcaatatga |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
22434517 |
cagaaacagaaagaagcaatgctgatataatagtccacttgaatctgaaatccactgatgataactatcacctgtagttcacaccaaaatatcaatatga |
22434616 |
T |
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| Q |
111 |
aacacaatcattacaatgactagacagtttaatataagatgccattcaaaaaatagtttcatataaggattggaaaaattagcccttttaaaaattacat |
210 |
Q |
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| T |
22434617 |
aacacaatcattacaatgactagacagtttaatataagatgccattcaaaaaatagtttaatataaggattggaaaaattagcccttttaaaaattacat |
22434716 |
T |
|
| Q |
211 |
aatgcttgtactttaatgactaagcagtaaatattacttcaannnnnnnnnctttcaaattggttagaaatttaagcataccattttttccactcgaaga |
310 |
Q |
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| T |
22434717 |
aatgcttgtactttaatgactaagcagtaaatattacttcaatttttttttctttcaaattggttagaaatttaagcataccattttttccactcgaaga |
22434816 |
T |
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| Q |
311 |
tccaatgctcttctccttcatcaggaacaatgctctctagtatacgccccgcgctctatcaattgttgtaaaaaatatttctata |
395 |
Q |
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| T |
22434817 |
tccaatgcacttctccttcatcaggaacaatgctctctagtatacgccccgcgctctatcaattgttgtaaaaaatatttctata |
22434901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 22440620 - 22440758
Alignment:
| Q |
49 |
ttgaatctgaaatccactgatgataaccatcacctgtagttcacaccaaattatcaatatgaaacacaatcattacaatgactagacagtttaatataa- |
147 |
Q |
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| T |
22440620 |
ttgaatctcaaatccacagatga---ccatcacctgcagttcaatccaaattatcaatataaaacacaatcgttacaatgactgtacaatttaatataag |
22440716 |
T |
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| Q |
148 |
gatgccattcaaaaaata-gtttcatataaggattggaaaaa |
188 |
Q |
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| T |
22440717 |
gatgccattaaaaaaaaacgcttaatataaggattggaaaaa |
22440758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 22465810 - 22466002
Alignment:
| Q |
16 |
acagaaagaagcaatgctgatataatagtccactt----------gaatctgaaatccactgatgataaccatcacctg-tagttcacacca--aatta- |
101 |
Q |
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| T |
22465810 |
acagaaagaagcaatgctgatataatagtccacttgatgaatttcgaatctcaaatccac---tgataaccatcacctgcaagttcacacaaataattat |
22465906 |
T |
|
| Q |
102 |
tcaatatgaaacacaatcattacaatgactagacagtttaatataag-atgccattca-aaaaatagtttcatataaggattggaaaaattagcccttt |
198 |
Q |
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| T |
22465907 |
tcaatat-aaacaaaataatga-aacgattagacagtttcatataagaatgccattcagaaaaatagtttaatataatgattgg-aaaattagcccttt |
22466002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 22429867 - 22429907
Alignment:
| Q |
306 |
gaagatccaatgctcttctccttcatcaggaacaatgctct |
346 |
Q |
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| T |
22429867 |
gaagatccaatgctcttctccttcatcgggaacaatgctct |
22429907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 22633355 - 22633420
Alignment:
| Q |
50 |
tgaatctgaaatccactgatgataaccatcacctgtagttcacaccaaattatcaatatgaaacacaat |
118 |
Q |
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| T |
22633355 |
tgaatctcaaatccactgatgg---ccatcacctgcagttcacaccaaattattaatataaaacacaat |
22633420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 22628630 - 22628685
Alignment:
| Q |
50 |
tgaatctgaaatccactgatgataaccatcacctgtagttcacaccaaattatcaatat |
108 |
Q |
| |
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||||||| ||||||| |||||| |||||||||| ||||||||||||||||||||||| |
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| T |
22628630 |
tgaatctcaaatccattgatga---ccatcacctgcagttcacaccaaattatcaatat |
22628685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 22429755 - 22429802
Alignment:
| Q |
199 |
taaaaattacataatgcttgtactttaatgactaagcagtaaatatta |
246 |
Q |
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|||||||||||||||||||||| ||| |||||||| || ||||||||| |
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| T |
22429755 |
taaaaattacataatgcttgtattttcatgactaaacaataaatatta |
22429802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 22448634 - 22448667
Alignment:
| Q |
75 |
ccatcacctgtagttcacaccaaattatcaatat |
108 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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| T |
22448634 |
ccatcacctgcagttcacaccaaattatcaatat |
22448667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 22366209 - 22366249
Alignment:
| Q |
306 |
gaagatccaatgctcttctccttcatcaggaacaatgctct |
346 |
Q |
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||||||||||||||||| ||||| ||||||| ||||||||| |
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| T |
22366209 |
gaagatccaatgctcttttcctttatcaggagcaatgctct |
22366249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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