View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_19 (Length: 404)
Name: NF1571_high_19
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 42117147 - 42117535
Alignment:
| Q |
1 |
tctaaggttgatcaggccgtaacccccgaaccaaagcgatcaagatttatgccccgataggttgggctcataacttccaatagggatattttcatgattt |
100 |
Q |
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| T |
42117147 |
tctaaggttgatcgggccgtaacccccgaaccaaagcgatcaagatttatgccccgataggttgggctcataactcccaatagggatattttcatgattt |
42117246 |
T |
|
| Q |
101 |
ctaaaggcatgtgagcaattgaagagacctattgagaaatcttaatacacaaggggtaaaattatgtcatgtaatgttgggctcatagatagctaatagg |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42117247 |
ctaaaggcatgtgagcaattgaagggacctattgagaaatcttaatacacaaggggtaaagttatgtcatgtaatgttgggctcatagatagctaatagg |
42117346 |
T |
|
| Q |
201 |
tacaagttatgggttgctctgctatcacaatttatccacttattcttcttcccttcatcctgtttatctcaacctctcatcttcaaaggtgaaccaacaa |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42117347 |
tacaagtaatgggttgctctgctatcacaatttatccacttattcttcttcccttcatcctgtttatctcaacctctcatcttcaaaggtgaaccaacaa |
42117446 |
T |
|
| Q |
301 |
agctgcaaactctttaaaccaagccatatatgattaggtcgatctcctctacatcaattatagtcttcaatgctttagaccttgtctct |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42117447 |
agctgcaaactctttaaaccaagccatatatgattaggtcgatctcctctacatcaattatagtcttcaatgctttagaccttgtctct |
42117535 |
T |
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