View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_2 (Length: 682)
Name: NF1571_high_2
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1571_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 38421359 - 38421665
Alignment:
Q |
19 |
ctcacaaacacttgtgtcagtagataagctcaaataagtcattccaaaacatacccgtaaacccaataaccaaattcagagcttcatgtaatccaagagt |
118 |
Q |
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T |
38421359 |
ctcacaaacacttgtgtcagtagataagctcaaataagtcattccaaaacatacccgtaaacccaataaccaaattcagagcttcatgtaatccaagact |
38421458 |
T |
|
Q |
119 |
gctatttaggagagtagtatgcatatagtgaaatggaaatttattataagtttgtggtggagaagaaagagaaggcaataatataatgtatgcatataaa |
218 |
Q |
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T |
38421459 |
gctatttaggagagtattatgcgtatagtgaaatgaaaatttattataagtttgtggtggaaaagaaagagaaggcaataatataatgtatgcatataaa |
38421558 |
T |
|
Q |
219 |
acagtaaaatttgtagcacgtaaagtttagttctttactaaggtaagtttcagagtaatatactttaacaaaccatggattgtgttgaaatagcatgatt |
318 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
38421559 |
acagtaaaatttggagcacgtaaagtttagttctttactaaggtaagtttcagagtaatatactttaacaaaccatggattgtgttgaaatagcatgatt |
38421658 |
T |
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Q |
319 |
cataagg |
325 |
Q |
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||||||| |
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T |
38421659 |
cataagg |
38421665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 367 - 674
Target Start/End: Original strand, 38421702 - 38422020
Alignment:
Q |
367 |
ttagcttcttatcaatagaattctcctcaaagatttgagagttaaactgagaacatatgaagaactgatttagaacttgcaacatgtcttttgattttca |
466 |
Q |
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T |
38421702 |
ttagcttcttatcaatagaattctcctcaaagatttgagagttaaactgagaacatatgaagaactgatttagaacttgcaacatgtcttttgattttca |
38421801 |
T |
|
Q |
467 |
agagccaaaaatgtttattgacatagaaaatatctctattcaatgaatatattgaaaaagagatttgctcaaatatacctgaaggatc-----------t |
555 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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T |
38421802 |
agagccaaaaatgtttattgacatagaaaatatctctattcaatgaatatattgagaaagagatttgctcaaatatacctgaaggatctttttttttttt |
38421901 |
T |
|
Q |
556 |
tttaatttataagcagcattgttttatcatttctataagtaatccaacctaactaactaagcatcttaactcccctctcaattaactactatatcataac |
655 |
Q |
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T |
38421902 |
tttaatttataagcagcattgttttatcatttctataagtaatccaacctaactaactaagcatcttaactcccctctcaattaactactatatcataac |
38422001 |
T |
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Q |
656 |
cgttttagccagtataatc |
674 |
Q |
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|||||||||||||| |||| |
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T |
38422002 |
cgttttagccagtaaaatc |
38422020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 38602430 - 38602476
Alignment:
Q |
19 |
ctcacaaacacttgtgtcagtagataagctcaaataagtcattccaaa |
66 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||| |||||| |
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T |
38602430 |
ctcacaaa-acttatgtcagtagataagctcaaataagtcaatccaaa |
38602476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 14980628 - 14980658
Alignment:
Q |
36 |
cagtagataagctcaaataagtcattccaaa |
66 |
Q |
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T |
14980628 |
cagtagataagctcaaataagtcattccaaa |
14980658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 14932413 - 14932445
Alignment:
Q |
34 |
gtcagtagataagctcaaataagtcattccaaa |
66 |
Q |
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T |
14932413 |
gtcagtagataagctcaaataagtcaatccaaa |
14932445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 1133040 - 1133070
Alignment:
Q |
29 |
cttgtgtcagtagataagctcaaataagtca |
59 |
Q |
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T |
1133040 |
cttgtgtcagtagataagctcaaataagtca |
1133070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 27043789 - 27043751
Alignment:
Q |
28 |
acttgtgtcagtagataagctcaaataagtcattccaaa |
66 |
Q |
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|||| ||||||||||||||||||||||||||| |||||| |
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T |
27043789 |
acttatgtcagtagataagctcaaataagtcaatccaaa |
27043751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 26990179 - 26990146
Alignment:
Q |
33 |
tgtcagtagataagctcaaataagtcattccaaa |
66 |
Q |
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||||||||||||||||||||||||||| |||||| |
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T |
26990179 |
tgtcagtagataagctcaaataagtcaatccaaa |
26990146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 26911696 - 26911740
Alignment:
Q |
22 |
acaaacacttgtgtcagtagataagctcaaataagtcattccaaa |
66 |
Q |
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||||| |||| ||||||||||||| ||||||||||||| |||||| |
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T |
26911696 |
acaaaaacttatgtcagtagataaactcaaataagtcaatccaaa |
26911740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 6292608 - 6292641
Alignment:
Q |
33 |
tgtcagtagataagctcaaataagtcattccaaa |
66 |
Q |
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||||||||||||||||||||||||||| |||||| |
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T |
6292608 |
tgtcagtagataagctcaaataagtcaatccaaa |
6292641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 19302530 - 19302491
Alignment:
Q |
19 |
ctcacaaacacttgtgtcagtagataagctcaaataagtca |
59 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||| |
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T |
19302530 |
ctcacaaa-acttatgtcagtagataagctcaaataagtca |
19302491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 33089608 - 33089648
Alignment:
Q |
19 |
ctcacaaacacttgtgtcagtagataagctcaaataagtca |
59 |
Q |
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|||||||| || | ||||||||||||||||||||||||||| |
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|
T |
33089608 |
ctcacaaatacatatgtcagtagataagctcaaataagtca |
33089648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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