View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_20 (Length: 394)
Name: NF1571_high_20
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 44805302 - 44804935
Alignment:
| Q |
18 |
ttactatgataatgaattatagtttctacagtgttgtaagagaatatatgtctgacatggtggttttgtccttataggatgttcggtccactgatgatga |
117 |
Q |
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| T |
44805302 |
ttactatgataatgaattatagtttctacagtgttgtaagagaatatatgtctgacatggtggttttgtc-ttataggatgttcggtccactgatgatga |
44805204 |
T |
|
| Q |
118 |
tttgattgaagtcatgtaacaagttgcagttctaaattttgtcattctcaaactttctatgtgtggagtttgcttgatctttttaggagtacagatgaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44805203 |
tttgattgaagtcatgtaacaagttgcagttctaaattttgtcattctcaaactttctatgtgtggagtttgcttgatctttttaggagtacagatgaaa |
44805104 |
T |
|
| Q |
218 |
attagatttcttcttgtgtggtctatttaatagctgttaatgaagaccaagctgtattgatgttatggtttgtttgttatggtttatactctatattttg |
317 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44805103 |
attagatttcttcttgtgtggtccatttaatagctgttaatgaagaccaagctgtattgatgttatggtttgtttgttatggtttatactctatattttg |
44805004 |
T |
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| Q |
318 |
gttttattatattgtggaaactgcaatttgagataaatctgaatcttttgcaaattattatttcttctc |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44805003 |
gttttattatattgtggaaactgcaatttgagataaatctgaatcttttgcaaattattatttcttctc |
44804935 |
T |
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