View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_21 (Length: 392)
Name: NF1571_high_21
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 377
Target Start/End: Complemental strand, 38293246 - 38292884
Alignment:
| Q |
15 |
caaaggagaaatcaaagaaaatagagatgactgaagaatttcgagagctaacagcaaatataattgcccacactgcctttggtaccagctttgttcatgg |
114 |
Q |
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| T |
38293246 |
caaaggagaaatcaaagaaaatagagatgactgaagaatttcgagagctaacagcaaatataattgcccacactgcctttggtaccagctttgttcatgg |
38293147 |
T |
|
| Q |
115 |
aagagaagcttttgatgcacaaacacagcttcataagcactgcgtagcttcaaattctgacgttttcattcccggcactcagtatattaattaacctctc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38293146 |
aagagaagcttttgatgcacaaacacagcttcataagcactgcgtagcttcaaattccgacgttttcattcctggcactcagtatattaattaacctctc |
38293047 |
T |
|
| Q |
215 |
ttactctaaattcatttggttctgcattgatcagtacatatattaattattttctatggttttggattcttaatgctgcagatattttcctactaagtcg |
314 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38293046 |
ttactctaaattcatttggttctgcattgatcagtacatatattaattattttctatggttttggattcttaatgctgcagatattttcctactaagtca |
38292947 |
T |
|
| Q |
315 |
aatatcgagatatggaagcttgatagaaaaatgaagaaatcactacaatgcattatagaaagt |
377 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38292946 |
aatattgagatatggaagcttgatagaaaaatgaagaaatcactacaatgcattatagaaagt |
38292884 |
T |
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