View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_22 (Length: 347)
Name: NF1571_high_22
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_high_22 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 334
Target Start/End: Complemental strand, 4045 - 3732
Alignment:
| Q |
17 |
aggtagaagcccacaacaaggggttttccttctcactggcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatct |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4045 |
aggtagaagcccacaacaaggggttttccttctcactagcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatct |
3946 |
T |
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| Q |
117 |
gctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacatttgcatatcctaccacgaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3945 |
gctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacacttgcatatcctaccacgaaat |
3846 |
T |
|
| Q |
217 |
aagtaaaaactataactaacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacagc |
316 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3845 |
aagtaaaaacta----taacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacagc |
3750 |
T |
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| Q |
317 |
actgtcacagattgcttc |
334 |
Q |
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||||||||||||| |||| |
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| T |
3749 |
actgtcacagattccttc |
3732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 21447491 - 21447804
Alignment:
| Q |
17 |
aggtagaagcccacaacaaggggttttccttctcactggcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatct |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21447491 |
aggtagaagcccacaacaaggggttttccttctcactagcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatct |
21447590 |
T |
|
| Q |
117 |
gctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacatttgcatatcctaccacgaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21447591 |
gctaccctgaagtgaagatataaataaatgaaaccattattgaactgcaacaatagtagttttatacttcattaaacacttgcatatcctaccacgaaat |
21447690 |
T |
|
| Q |
217 |
aagtaaaaactataactaacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacagc |
316 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21447691 |
aagtaaaaacta----taacaaataactatttctgtaaagaagtataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacagc |
21447786 |
T |
|
| Q |
317 |
actgtcacagattgcttc |
334 |
Q |
| |
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||||||||||||| |||| |
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| T |
21447787 |
actgtcacagattccttc |
21447804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 40685126 - 40685001
Alignment:
| Q |
17 |
aggtagaagcccacaacaaggggttttccttctcactggcaaaacttctcatcatgtgcctaatggaatccgttgatacaactgtcgtgattcccaatct |
116 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||| | |
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| T |
40685126 |
aggtagaggcccataacaaggggttttccttttcattagcaaaacctctcatcatgtgcctaatggaatcagttgatacaactgttgtgattcccagccg |
40685027 |
T |
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| Q |
117 |
gctaccctgaagtgaagatataaata |
142 |
Q |
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|| ||||||||| |||||||||||| |
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| T |
40685026 |
acttccctgaagtaaagatataaata |
40685001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 40684848 - 40684774
Alignment:
| Q |
260 |
tataccagtattgcagacaacgtcgattttccacatccgctagtgccacataacagcactgtcacagattgcttc |
334 |
Q |
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|||||||| | ||||||||| || ||||| ||||| || ||||| ||||| || |||||||||||||||| |||| |
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| T |
40684848 |
tataccagcaatgcagacaatgtggatttcccacaaccactagttccacacaaaagcactgtcacagattccttc |
40684774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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