View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_25 (Length: 313)
Name: NF1571_high_25
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 18005008 - 18004727
Alignment:
| Q |
15 |
gacagggagtgtagggattggtagtggaggagctggtaatggaaagagtggtaattgattcttttctacttgtgtcttttcaatgttataattcttgctt |
114 |
Q |
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| T |
18005008 |
gacagggagtgtagggattggtagtggaggagctggtaatggaaagggtggtaactgattcttatctacttgtgtcttttcaatgttataattcttgctt |
18004909 |
T |
|
| Q |
115 |
ggattaacttgatcttctacctttcctccaccaataacttctttctccttaattggaatattcttgagttgtctagcaccacttatggtaacaaggttgt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |
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| T |
18004908 |
ggattaacttgatcttctacctttcctccaccaataacttctttctccttaattggaatattcttgaattgtctagaaccacttatggtaacaaagttgg |
18004809 |
T |
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| Q |
215 |
tcatcaccaaaagcaaacaaaacaagaacattaatggattcaaagtcattgtgtaagatttttggaaagccatacttagaaa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18004808 |
tcatcaccaaaagcaaacaaaacaagaacattaatggattcaaagtcattgtgtaagatttttggaaagccatacttagaaa |
18004727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 20644547 - 20644266
Alignment:
| Q |
15 |
gacagggagtgtagggattggtagtggaggagctggtaatggaaagagtggtaattgattcttttctacttgtgtcttttcaatgttataattcttgctt |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20644547 |
gacagggagtgtagggattggtagtggaggagctggtaatggaaagggtggtaactgattcttatctacttgtgtcttttcaatgttataattcttgctt |
20644448 |
T |
|
| Q |
115 |
ggattaacttgatcttctacctttcctccaccaataacttctttctccttaattggaatattcttgagttgtctagcaccacttatggtaacaaggttgt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |
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| T |
20644447 |
ggattaacttgatcttctacctttcctccaccaataacttctttctccttaattggaatattcttgaattgtctagaaccacttatggtaacaaagttgg |
20644348 |
T |
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| Q |
215 |
tcatcaccaaaagcaaacaaaacaagaacattaatggattcaaagtcattgtgtaagatttttggaaagccatacttagaaa |
296 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20644347 |
tcatcaccaaaagcaaacaaaacaagaacattaatggattcaaagtcattgtgtaagatttttggaaagccatacttagaaa |
20644266 |
T |
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