View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_30 (Length: 298)
Name: NF1571_high_30
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 43476467 - 43476736
Alignment:
| Q |
11 |
caaaggggaaaaatgtctttctaaataaaccagcgaagatgttcgtcaatagtattctcctaatatagacccctttttaaatgataatcttccgagaaaa |
110 |
Q |
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| T |
43476467 |
caaaggggaaaaatgtctttctaaataa-ccagcgaagatgtccgtcaatagtattctcctaatatagacacctttttaaatgataatcttccgagaaaa |
43476565 |
T |
|
| Q |
111 |
gtttatatggtaccaacaccaaagtttcctcataataaaggggaagtgtgtaagttgaagaaagccttccatagtctgaaacaagtacatgagcttggtt |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43476566 |
gtttatatggtacctccaccaaagtttcctcataataaaggggaagtgtgtaagttgaagaaagccttccatagtctgaaacaagtacatgagcttggtt |
43476665 |
T |
|
| Q |
211 |
tgagaagttcttcaccgtcatttcatttatcgatttttgttctagtgatcatgattttgctttgtttctta |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43476666 |
tgagaagttcttcaccgtcatttcatttatcgatttttgttctagtgatcatgattttgctttgtttctta |
43476736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 9878494 - 9878413
Alignment:
| Q |
139 |
ctcataataaaggggaagtgtgtaagttgaagaaagccttccatagtctgaaacaag-tacatgagcttggtttgagaagtt |
219 |
Q |
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|||||||| ||||||||||||||||||| ||||| | || | ||||||||||||| | | ||||||||||||||||||| |
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| T |
9878494 |
ctcataatcaaggggaagtgtgtaagttaaagaaggttttatacagtctgaaacaagctccgcgagcttggtttgagaagtt |
9878413 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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