View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1571_high_34 (Length: 281)
Name: NF1571_high_34
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1571_high_34 |
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[»] scaffold0054 (2 HSPs) |
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[»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 9569026 - 9568775
Alignment:
Q |
14 |
ttcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctc |
113 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
9569026 |
ttcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctc |
9568927 |
T |
|
Q |
114 |
cacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataacaaatgacat |
213 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
9568926 |
cacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatcaccgtaaccagcgtgctcacccataatagatacataacaaatgacat |
9568827 |
T |
|
Q |
214 |
tatagtcatttctaagttcattgtaaccaaatccatgaagataagatgtatc |
265 |
Q |
|
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
T |
9568826 |
tatagtcatttctaagttcatcgtaaccaaatccatgaagataagatgtatc |
9568775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 9574155 - 9573913
Alignment:
Q |
16 |
cttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctcca |
115 |
Q |
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|
||||||||||| | |||||||||||||||| |||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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|
T |
9574155 |
cttcttcacactatcaatgacacacaccatccatgcaaacttgagtgccgtcaatacctgccaacgaataaggcatgtcaaaaacatcaagtatcctcca |
9574056 |
T |
|
Q |
116 |
cgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataacaaatgacatta |
215 |
Q |
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|
|||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||| | |||| | |||||| | |||||||||||||||| ||||| | |
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|
T |
9574055 |
cgagttagttcttaagctatatatctcccagaatgggtctaaagacatatttccgtagctagcgcgttcacccttgatagatacataacaaaagacataa |
9573956 |
T |
|
Q |
216 |
tagtcatttctaagttcattgtaaccaaatccatgaagataag |
258 |
Q |
|
|
|||||||||||||| | | |||||||||||||||||||||| |
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|
T |
9573955 |
tagtcatttctaagattgtcataaccaaatccatgaagataag |
9573913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 9594021 - 9594262
Alignment:
Q |
16 |
cttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctcca |
115 |
Q |
|
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| |||||||| ||||||||| |||||||||||| |
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|
T |
9594021 |
cttcttcagccaaccaatgacacacaccatccatgtagacttgagtgccgtcaatacgtgccaatgaacaaggcatgccaaaaacattaagtatcctcca |
9594120 |
T |
|
Q |
116 |
cgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataacaaatgacatta |
215 |
Q |
|
|
||||||||||||||||||||||||| ||| | |||||||||| ||||||||| || ||| | || |||||| |||||| ||| ||||| ||||| ||| |
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|
T |
9594121 |
cgagttagttcttaagctatatatcacccaaattgggtctaaagacatatctccatagccatcatgttcacccctaatagttacgtaacatatgacctta |
9594220 |
T |
|
Q |
216 |
tagtcatttctaagttcattgtaaccaaatccatgaagataa |
257 |
Q |
|
|
||||||||||||| | | |||||||||||||||||||||| |
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|
T |
9594221 |
gagtcatttctaagattgtcgtaaccaaatccatgaagataa |
9594262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 9582228 - 9582469
Alignment:
Q |
16 |
cttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctcca |
115 |
Q |
|
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| |||||||| | ||||||||||||||||||| |
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|
T |
9582228 |
cttcttcagccaaccaatgacacacaccatccatgtagacttgagtgccgtcaatacgtgccaatgaacaaggcatgctagaaacatcaagtatcctcca |
9582327 |
T |
|
Q |
116 |
cgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataacaaatgacatta |
215 |
Q |
|
|
||||||||||||||||||||||||| ||| | |||||||||| |||| ||| || |||||||| |||||| |||||| ||| | ||| ||||| ||| |
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|
T |
9582328 |
cgagttagttcttaagctatatatcacccaaattgggtctaaagacatacatccatagccagcgtgttcacccgtaatagttacgtgacagatgacctta |
9582427 |
T |
|
Q |
216 |
tagtcatttctaagttcattgtaaccaaatccatgaagataa |
257 |
Q |
|
|
|||||||||||||| | | ||| |||||||||||||||||| |
|
|
T |
9582428 |
tagtcatttctaagattgtcgtagccaaatccatgaagataa |
9582469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 9587923 - 9588164
Alignment:
Q |
16 |
cttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctcca |
115 |
Q |
|
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| |||||||| | ||||||||||||||||||| |
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|
T |
9587923 |
cttcttcagccaaccaatgacacacaccatccatgtagacttgagtgccgtcaatacgtgccaatgaacaaggcatgctagaaacatcaagtatcctcca |
9588022 |
T |
|
Q |
116 |
cgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataacaaatgacatta |
215 |
Q |
|
|
||||||||||||||||||||||||| ||| | |||||||||| |||| ||| || |||||||| |||||| |||||| ||| | ||| ||||| ||| |
|
|
T |
9588023 |
cgagttagttcttaagctatatatcacccaaattgggtctaaagacatacatccatagccagcgtgttcacccgtaatagttacgtgacagatgacctta |
9588122 |
T |
|
Q |
216 |
tagtcatttctaagttcattgtaaccaaatccatgaagataa |
257 |
Q |
|
|
|||||||||||||| | | ||| |||||||||||||||||| |
|
|
T |
9588123 |
tagtcatttctaagattgtcgtagccaaatccatgaagataa |
9588164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 264
Target Start/End: Original strand, 9602823 - 9603072
Alignment:
Q |
15 |
tcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcc--- |
111 |
Q |
|
|
|||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||| |
|
|
T |
9602823 |
tcttcttcccacaaccaatgacacacaccatccatgtagacttgactgccgtcaataagtgccaaggaataaggcatgtcaaaaa---taagtatccttt |
9602919 |
T |
|
Q |
112 |
tccacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataacaaatgac |
211 |
Q |
|
|
|||||||||||||||||||||||||| || ||| | |||||||||| ||||| ||| || | |||||| | |||| |||||| || ||||| ||||| |
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|
T |
9602920 |
tccacgagttagttcttaagctatatttcacccaaattgggtctaaagacatatgtccatagctagcgtgttgacccgtaatagttatgtaacatatgac |
9603019 |
T |
|
Q |
212 |
attatagtcatttctaagttcattgtaaccaaatccatgaagataagatgtat |
264 |
Q |
|
|
|||||| ||||||||||| || | |||||||||||||||||||||||| |||| |
|
|
T |
9603020 |
attataatcatttctaaggtcgtcgtaaccaaatccatgaagataagacgtat |
9603072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 54295329 - 54295579
Alignment:
Q |
19 |
cttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgc------caaagaataaggcatgtcaaaaacatcaagtatcct |
112 |
Q |
|
|
||||||||||||||||||||||||||| ||||||||||| | ||| ||| || ||| |||||||||||||||||||| ||||||||||||| |
|
|
T |
54295329 |
cttcacacaaccaatgacacacaccatccatgtagactttggagccctcactatatgggattgacaaagaataaggcatgtcaa---catcaagtatcct |
54295425 |
T |
|
Q |
113 |
ccacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataacaaatgaca |
212 |
Q |
|
|
||| ||||||||||||||||||||||||| |||||| | |||||||| |||| |||||| |||||| ||| | |||| ||||||||||||||| |
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|
T |
54295426 |
ccatgagttagttcttaagctatatatctcccagaaggagtctaaagacataactccgtggtcagcgtattcaacatcaatacatacataacaaatgagc |
54295525 |
T |
|
Q |
213 |
ttatagtcatttctaagttcattgtaaccaaatccatgaagataagatgtatct |
266 |
Q |
|
|
|||||||||||| ||||||| | |||||||||||||||| |||| |||||||| |
|
|
T |
54295526 |
ttatagtcatttataagttcgtcgtaaccaaatccatgattataatatgtatct |
54295579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 37895793 - 37895678
Alignment:
Q |
18 |
tcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacg |
117 |
Q |
|
|
||||||||||||||||||||||| ||| ||| |||||||| ||||| || ||||| ||||||||||||||||||| |||||||||| ||||||||| |
|
|
T |
37895793 |
tcttcacacaaccaatgacacacttcatccatatagacttgggtgccctccttacattccaaagaataaggcatgtc---aacatcaagtttcctccacg |
37895697 |
T |
|
Q |
118 |
agttagttcttaagctata |
136 |
Q |
|
|
| ||| |||||| |||||| |
|
|
T |
37895696 |
aattacttcttaggctata |
37895678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 42446150 - 42446012
Alignment:
Q |
18 |
tcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacg |
117 |
Q |
|
|
||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||| ||||||||||||||||||| |||||||||| ||||||||| |
|
|
T |
42446150 |
tcttcacacaaccaatgacacactccatccatgtagacttgggtgccctcaatacattccaaagaataaggcatgtc---aacatcaagtttcctccacg |
42446054 |
T |
|
Q |
118 |
agttagttcttaagctatatatcttccagaacgggtctaaag |
159 |
Q |
|
|
|||| |||||| |||||||||| ||| || | |||||||| |
|
|
T |
42446053 |
ggttacttcttagactatatatctcccataaggagtctaaag |
42446012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 29012671 - 29012590
Alignment:
Q |
15 |
tcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaa |
96 |
Q |
|
|
||||||||| |||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| |||||||||| |
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|
T |
29012671 |
tcttcttcagacaaccaatgacacactccatccatgtagacttgggtgccgtcaatacagtccaaagaatacggcatgtcaa |
29012590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 34281746 - 34281628
Alignment:
Q |
20 |
ttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacgag |
119 |
Q |
|
|
|||||||||||||||||||||||| | |||||||| ||| ||||| ||| |||| ||| |||| | |||||||| |||||||||| ||||||||| |
|
|
T |
34281746 |
ttcacacaaccaatgacacacaccgtccatgtagatttgggtgccttcagtacagtccacagaagacggcatgtc---aacatcaagttctctccacgag |
34281650 |
T |
|
Q |
120 |
ttagttcttaagctatatatct |
141 |
Q |
|
|
||| | |||| ||||||||||| |
|
|
T |
34281649 |
ttactccttaggctatatatct |
34281628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 29131136 - 29131013
Alignment:
Q |
20 |
ttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacgag |
119 |
Q |
|
|
|||||||||||||||||||||||||| ||| |||||||| || || || |||| | || |||||||||||||| |||||||||| ||||| ||| |
|
|
T |
29131136 |
ttcacacaaccaatgacacacaccatccatatagacttgggttcctgcattacagtctaacgaataaggcatgtc---aacatcaagttctctccatgag |
29131040 |
T |
|
Q |
120 |
ttagttcttaagctatatatcttccag |
146 |
Q |
|
|
||| || || |||||||||||| |||| |
|
|
T |
29131039 |
ttactttttgagctatatatctcccag |
29131013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 29299908 - 29299827
Alignment:
Q |
15 |
tcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaa |
96 |
Q |
|
|
|||| ||||||||||||||| ||||| |||| |||||||||||| ||||| ||| ||| | |||||||||||||||||| |
|
|
T |
29299908 |
tctttttcacacaaccaatggcacactccatccatgtagacttgggtgccctcagtacgatcagaagaataaggcatgtcaa |
29299827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 32960998 - 32961113
Alignment:
Q |
23 |
acacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacgagtta |
122 |
Q |
|
|
||||||||||||||||||||||| |||||||| || ||||| || ||| |||||| |||||||||| |||||||| |||||||||||||| |
|
|
T |
32960998 |
acacaaccaatgacacacaccatccatgtagagatgggtgccctcggaccattttaaagaaggtggcatgtcaa---catcaagtttcctccacgagtta |
32961094 |
T |
|
Q |
123 |
gttcttaagctatatatct |
141 |
Q |
|
|
|||||| ||||||||||| |
|
|
T |
32961095 |
cttcttacgctatatatct |
32961113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 33709 - 33829
Alignment:
Q |
18 |
tcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacg |
117 |
Q |
|
|
||||||||||||||||||||||| |||| |||||||||||| || || || ||||| ||||| | |||||||| || ||||||| ||||||||| |
|
|
T |
33709 |
tcttcacacaaccaatgacacactccatccatgtagacttgggttccctctatacagtaagaagaagatggcatgtc---aatatcaagtttcctccacg |
33805 |
T |
|
Q |
118 |
agttagttcttaagctatatatct |
141 |
Q |
|
|
||||| |||||| ||||||||||| |
|
|
T |
33806 |
agttacttcttaggctatatatct |
33829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 40060 - 40180
Alignment:
Q |
18 |
tcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacg |
117 |
Q |
|
|
||||||||||||||||||||||| |||| |||||||||||| || || || ||||| ||||| | |||||||| || ||||||| | ||||||| |
|
|
T |
40060 |
tcttcacacaaccaatgacacactccatccatgtagacttgggttccctctatacagtaagaagaagatggcatgtc---aatatcaagttttctccacg |
40156 |
T |
|
Q |
118 |
agttagttcttaagctatatatct |
141 |
Q |
|
|
||||| |||||| ||||||||||| |
|
|
T |
40157 |
agttacttcttaggctatatatct |
40180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 16473 - 16614
Alignment:
Q |
15 |
tcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctcc |
114 |
Q |
|
|
|||| |||||||||||||||||| | ||| ||||||||||| ||||| ||| ||||| ||||| | |||||||||| | |||||| |||||| |
|
|
T |
16473 |
tctttttcacacaaccaatgacagatttcatctatgtagacttgggtgccctcattacattttgaagaaaatggcatgtcaa---cgtcaagtttcctcc |
16569 |
T |
|
Q |
115 |
acgagttagttcttaagctatatatcttccagaacgggtctaaag |
159 |
Q |
|
|
|||||||| || ||| ||||||||||| ||| || || ||||||| |
|
|
T |
16570 |
acgagttacttgttaggctatatatctcccataaaggttctaaag |
16614 |
T |
|
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