View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_36 (Length: 259)
Name: NF1571_high_36
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 44956621 - 44956858
Alignment:
| Q |
5 |
aaacaacgagtcttggagagaaacaaagaatgtgttatatattgagcaagcattgtaagctcacatctccaagaagggaggtggatagaagtgaaatgag |
104 |
Q |
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| T |
44956621 |
aaacaacgagtcttggagagaaacaaagaatgtgttatatattgagcaagcattgtaagctcacatctccaagaaaggaggtggatagaagtgaaatgag |
44956720 |
T |
|
| Q |
105 |
gatacacgtttaagaaaggagacaatcaacatatgcaagacaattcaagagatggcatgatcttgttcaatcttcatcgataacaagaagggaaataagc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44956721 |
gatacacgtttaagaaaggagacaatcaacatatgcaagacaattcaagagatggcatgatcttgttcaatcttcatcgataacaagaagggaaataagc |
44956820 |
T |
|
| Q |
205 |
cacaaaagagacaaaaatttagtattattattagaaca |
242 |
Q |
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||||||||||||||||||||||||||||| |||||||| |
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| T |
44956821 |
cacaaaagagacaaaaatttagtattattgttagaaca |
44956858 |
T |
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