View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_38 (Length: 254)
Name: NF1571_high_38
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 10287983 - 10288209
Alignment:
| Q |
17 |
acttaataagatgttttatctagttaaaactaatgaagttcttcctctttctatttaattcattctgaaattatgttatcgagaaatttcttattattct |
116 |
Q |
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| T |
10287983 |
acttaataagatgttttatctagttaaaactaatgaagttcttcctctttctatttaattcattctgaaattatgttatcgagaaatttcttattattct |
10288082 |
T |
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| Q |
117 |
catttttattattcatgtgacaacagtatcataggggggtgtttgatcattgctggtctgtatactgttacctggacatcttataaagaaaggcgggcaa |
216 |
Q |
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| T |
10288083 |
catttttattattcatgtgacaacagtatcataggggggtgtttgatcattgctggtctgtatactgttacctggacatcttataaagaaaggcgggcaa |
10288182 |
T |
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| Q |
217 |
ttgttggaattacttctcatgtctctg |
243 |
Q |
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| T |
10288183 |
ttgttggaattacttctcatgtctctg |
10288209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 37 - 232
Target Start/End: Complemental strand, 10278634 - 10278439
Alignment:
| Q |
37 |
tagttaaaactaatgaagttcttcctctttctatttaattcattctgaaattatgttatcgagaaatttcttattattctcatttttattattcatgtga |
136 |
Q |
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| T |
10278634 |
tagttaaacttaatgatgttcttcctctttctatagcatgcattctgaaattatgttatcaagaaatttcttattgtagttatttttataattcatgtga |
10278535 |
T |
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| Q |
137 |
caacagtatcataggggggtgtttgatcattgctggtctgtatactgttacctggacatcttataaagaaaggcgggcaattgttggaattacttc |
232 |
Q |
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| T |
10278534 |
caacagtatcatagggggatctttgatcatagctggtctttacattgttacatgggcatcttataaagaaaaacagggaattgttgaaattacttc |
10278439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 47 - 235
Target Start/End: Original strand, 10296569 - 10296757
Alignment:
| Q |
47 |
taatgaagttcttcctctttctatttaattcattctgaaattatgttatcgagaaatttcttattattctcatttttattattcatgtgacaacagtatc |
146 |
Q |
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|||| ||||| |||||||||| || || ||||||||||||||||||| ||||||||||||| |||||| | |||||| || ||| |||||||||||| |
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| T |
10296569 |
taatcaagtttttcctctttcaataacatgcattctgaaattatgttattgagaaatttcttactattcttacttttataatccatatgacaacagtata |
10296668 |
T |
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| Q |
147 |
ataggggggtgtttgatcattgctggtctgtatactgttacctggacatcttataaagaaaggcgggcaattgttggaattacttctca |
235 |
Q |
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| T |
10296669 |
ataggggggtctttgatcattgttggactttatactgttacctgggcatcttttaaacaaagacaggcaactgttggaactacttctca |
10296757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 242
Target Start/End: Original strand, 10303954 - 10304147
Alignment:
| Q |
47 |
taatgaagttcttcctctttctatttaattcattctgaaattatgttatcgagaaatttcttattattctcatttttattattcatgtgacaacagtatc |
146 |
Q |
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|||| ||||||||| |||||||| |||||||||||| |||||||| | |||||||||||||| | ||||||||||| | ||||||||||||||||| |
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| T |
10303954 |
taatcaagttcttctgctttctatagcattcattctgaa-ttatgttaccaagaaatttcttattggt-tcatttttattctccatgtgacaacagtatc |
10304051 |
T |
|
| Q |
147 |
ataggggggtgtttgatcattgctggtctgtatactgttacctggacatcttataaagaaaggcgggcaattgttggaattacttctcatgtctct |
242 |
Q |
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|||||||||| |||||||||||||||||| | | |||||||||| |||||||||||||||| | ||||| | ||| |||| ||||||||| |||| |
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| T |
10304052 |
ataggggggtctttgatcattgctggtctctttggtgttacctgggcatcttataaagaaagacaggcaactcttgaaatttcttctcatgactct |
10304147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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