View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_47 (Length: 246)
Name: NF1571_high_47
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_high_47 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 41820794 - 41820560
Alignment:
| Q |
1 |
ctctaattttggtgtatgctagttttactccacacatcaaagtattggcgtcggttttgatcacaacgcaaccactgtattcttcctttccaaccgtata |
100 |
Q |
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| T |
41820794 |
ctctaattttggtttatgctagttttactc-acacatcaaagtattggcgtcggttttgatcacaacgcaaccactgtattcttcctttccaaccgtata |
41820696 |
T |
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| Q |
101 |
taaacaagttatcatgtccaattgaacaaagtacaattaagtaaaacgtttgattgatgcaaattattaagaatttatcgaatctcatctcagaaacatg |
200 |
Q |
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| T |
41820695 |
taaacaagttatcatgtccaattgaacaaagtacaattaagtacaacgtttgattgatgcaaattattaagaatttatcaaatctcatctcagaaacatg |
41820596 |
T |
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| Q |
201 |
tcgtggtggagtggtttctttgagctgaagcctttg |
236 |
Q |
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| T |
41820595 |
tcgtggtggagtggtttctttgagctgaagcctttg |
41820560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 41827353 - 41827273
Alignment:
| Q |
148 |
gtttgattgatgcaaattattaagaatttatcgaatctcatctcagaaacatgtcgtggtggagtggtttctttgagctga |
228 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41827353 |
gtttgattgatgcaaattattaagaatttatcaaatctcatctaagaaacatgtcgtggtggagtggtttctttgagctga |
41827273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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