View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_48 (Length: 244)
Name: NF1571_high_48
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_high_48 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 42116719 - 42116956
Alignment:
| Q |
7 |
aattctccatgtcccaagcctnnnnnnncaaacaacattaaattacaaacacctatattaaatgttagagatctcaaatattacaaacaaataattacct |
106 |
Q |
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| T |
42116719 |
aattctccatgtcccaagcctaaaaaaacaaacaacattaaattacaaacacatatattaaatgttagagatctcaaatattacaaacaaataattatct |
42116818 |
T |
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| Q |
107 |
acatgagagtcgagtattgagtcaactgcattctatgggaattagtcacctcacccatgtgtaggctacagcggaatccctgtatgaccactgattaatt |
206 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42116819 |
acatgagagtcaagtattgagtcaactgcattctatggggattagtcacctcacccatgtgtaggctacagcggaatccctgtatgaccactgattaatt |
42116918 |
T |
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| Q |
207 |
gtagtgagatcccagaagtactctaggtacaacacgtc |
244 |
Q |
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||||||||||||||||||| |||||||||||||||||| |
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| T |
42116919 |
gtagtgagatcccagaagtgctctaggtacaacacgtc |
42116956 |
T |
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