View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1571_high_5 (Length: 521)

Name: NF1571_high_5
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1571_high_5
NF1571_high_5
[»] chr2 (7 HSPs)
chr2 (1-461)||(8337449-8337905)
chr2 (371-437)||(45472409-45472475)
chr2 (375-429)||(25272349-25272402)
chr2 (375-429)||(13295464-13295519)
chr2 (383-439)||(8266310-8266366)
chr2 (383-431)||(43893203-43893251)
chr2 (371-434)||(44274544-44274607)
[»] chr5 (8 HSPs)
chr5 (374-434)||(36864500-36864560)
chr5 (376-439)||(23420988-23421051)
chr5 (375-429)||(25776910-25776965)
chr5 (371-429)||(7313838-7313896)
chr5 (375-445)||(13356216-13356286)
chr5 (381-434)||(25358060-25358113)
chr5 (410-439)||(33652680-33652709)
chr5 (375-436)||(36897742-36897803)
[»] chr4 (11 HSPs)
chr4 (375-436)||(14351342-14351403)
chr4 (375-434)||(48860532-48860591)
chr4 (374-436)||(36688427-36688489)
chr4 (371-427)||(2254028-2254084)
chr4 (375-422)||(12596755-12596802)
chr4 (372-445)||(52281109-52281182)
chr4 (376-429)||(16578589-16578642)
chr4 (371-439)||(17657982-17658050)
chr4 (375-439)||(53176305-53176369)
chr4 (374-429)||(26636518-26636573)
chr4 (377-424)||(34937113-34937160)
[»] chr1 (8 HSPs)
chr1 (371-434)||(39940561-39940624)
chr1 (373-427)||(12750559-12750613)
chr1 (371-437)||(47446706-47446772)
chr1 (375-434)||(19580186-19580245)
chr1 (381-434)||(10256854-10256906)
chr1 (375-444)||(14214608-14214677)
chr1 (377-425)||(8243370-8243418)
chr1 (375-434)||(10256783-10256842)
[»] chr3 (4 HSPs)
chr3 (381-439)||(8256909-8256967)
chr3 (375-431)||(39836944-39837000)
chr3 (375-429)||(42681187-42681241)
chr3 (381-434)||(42787700-42787753)
[»] chr7 (8 HSPs)
chr7 (372-436)||(39960314-39960378)
chr7 (371-434)||(785627-785690)
chr7 (375-429)||(24934558-24934612)
chr7 (275-327)||(3106028-3106080)
chr7 (370-434)||(26824992-26825056)
chr7 (375-439)||(27554576-27554640)
chr7 (371-438)||(30138863-30138930)
chr7 (371-446)||(31319591-31319666)
[»] chr6 (1 HSPs)
chr6 (375-431)||(15718472-15718528)
[»] chr8 (7 HSPs)
chr8 (371-429)||(13841855-13841913)
chr8 (372-429)||(13841923-13841981)
chr8 (372-434)||(15037752-15037814)
chr8 (376-429)||(35781234-35781287)
chr8 (402-434)||(6883627-6883659)
chr8 (377-425)||(7286655-7286703)
chr8 (375-431)||(36307997-36308053)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 8337905 - 8337449
Alignment:
Q  1 catttaatgaaggaatggaaattaatattttctttttgactccaatgaatggcagaaattatattgtcta-tctttctgaaattaagtgaaaacatatgt 99  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  8337905 catttaatgaaggaatagaaattaatattttctttttgactccaatgaatggcagaaattatattgtctagtctttctgaaattaagtgaaaacatattt 8337806  T
Q  100 cgatatgttttattacgagagtaagtactaaactttgtttgttctttaagagttttcttttgcaaaactctttaagaaaaacatcaaaattatatagctt 199  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  8337805 cgatatgttttattacaagagtaagtactaaactttgtttgttctttaagagttttcttttacaaaactctttaagaaaaacatcaaaattatatagcct 8337706  T
Q  200 agtcttgtttctaagagtggagaagttgcattaaatggaaatgaaaatattgttattatatttactacacattttgatcactattataagcattaaacca 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8337705 agtcttgtttctaagagtggagaagttgcattaaatggaaatgaaaatattgttattatatttactacacatttcgatcactattataagcattaaacca 8337606  T
Q  300 t-ttttaagttcattcaataaatgatgtagacagcatattatatagacatcatacatcaattcatcatagacgactacatatatcatttattgaatgaac 398  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8337605 ttttttaagttcattcaataaatgatgtagacagcatattatatagacatcatacatcaattcatcatagacgactacatatatcatttattgaatgaac 8337506  T
Q  399 tataaaagtaaatttttatttataatagtgatcggatggtgcatattaaagtttggtctagta 461  Q
    | |||||||||||||||||      ||||||||||||||||||||||||||||||||||||||    
T  8337505 tttaaaagtaaatttttat------tagtgatcggatggtgcatattaaagtttggtctagta 8337449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 437
Target Start/End: Complemental strand, 45472475 - 45472409
Alignment:
Q  371 gactacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatgg 437  Q
    ||||||||| ||||||||||||||||| |  ||||||||||||||| ||||||||||||||| ||||    
T  45472475 gactacatacatcatttattgaatgaatttaaaaagtaaatttttacttataatagtgatcgaatgg 45472409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 25272402 - 25272349
Alignment:
Q  375 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtga 429  Q
    |||||||| |||||||||| ||||| |||||||||| ||||||||||||||||||    
T  25272402 acatatattatttattgaacgaact-taaaagtaaaattttatttataatagtga 25272349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 429
Target Start/End: Original strand, 13295464 - 13295519
Alignment:
Q  375 acatatatcatttattgaatgaactataaaagtaaattttt-atttataatagtga 429  Q
    |||||||||||||||||||||||||  ||| || ||||||| ||||||||||||||    
T  13295464 acatatatcatttattgaatgaacttaaaatgtgaatttttgatttataatagtga 13295519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 439
Target Start/End: Complemental strand, 8266366 - 8266310
Alignment:
Q  383 catttattgaatgaactataaaagtaaatttttatttataatagtgatcggatggtg 439  Q
    |||||| ||||||||||   ||| | ||||||||||||||||||||| |||||||||    
T  8266366 catttaatgaatgaacttagaaaatgaatttttatttataatagtgaccggatggtg 8266310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 43893203 - 43893251
Alignment:
Q  383 catttattgaatgaactataaaagtaaatttttatttataatagtgatc 431  Q
    |||||||||||||||||   ||| | |||||||||||||||||||||||    
T  43893203 catttattgaatgaacttataaattgaatttttatttataatagtgatc 43893251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 434
Target Start/End: Complemental strand, 44274607 - 44274544
Alignment:
Q  371 gactacatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtgatcgga 434  Q
    ||||||||||||||||||||||||||| ||| ||| || || |||| ||||||||||||| ||||    
T  44274607 gactacatatatcatttattgaatgaatcta-aaatgtcaacttttgtttataatagtgaccgga 44274544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 36864500 - 36864560
Alignment:
Q  374 tacatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtgatcgga 434  Q
    |||||||||||||||||||||||| ||| |||||| || |||||||||||||||||||||||    
T  36864500 tacatatatcatttattgaatgaatcta-aaaagtgaacttttatttataatagtgatcgga 36864560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 439
Target Start/End: Original strand, 23420988 - 23421051
Alignment:
Q  376 catatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatggtg 439  Q
    |||| |||||||||||||||||||  ||||||||| |||| ||| || ||||||||||||||||    
T  23420988 catacatcatttattgaatgaacttaaaaagtaaacttttgtttctattagtgatcggatggtg 23421051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 25776965 - 25776910
Alignment:
Q  375 acatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtga 429  Q
    ||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||    
T  25776965 acatatatcatttattgaatgaacctaaaaaaataaaattttatttataatagtga 25776910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 429
Target Start/End: Complemental strand, 7313896 - 7313838
Alignment:
Q  371 gactacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtga 429  Q
    ||||||||||||||||||||||||||| |  |||||| || ||||| |||||| |||||    
T  7313896 gactacatatatcatttattgaatgaatttaaaaagtgaacttttacttataaaagtga 7313838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 445
Target Start/End: Original strand, 13356216 - 13356286
Alignment:
Q  375 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatggtgcatatt 445  Q
    ||||| |||||||||||||||||||  ||||||| ||||||  |||||||| ||| |||| |||| |||||    
T  13356216 acatacatcatttattgaatgaacttaaaaagtagatttttgcttataataatgaccggagggtgtatatt 13356286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 25358113 - 25358060
Alignment:
Q  381 atcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 434  Q
    |||||||||||||||||   ||||| |||||||||| |||||||||||| ||||    
T  25358113 atcatttattgaatgaatcttaaaaataaatttttacttataatagtgaccgga 25358060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 439
Target Start/End: Original strand, 33652680 - 33652709
Alignment:
Q  410 atttttatttataatagtgatcggatggtg 439  Q
    ||||||||||||||||||||||||||||||    
T  33652680 atttttatttataatagtgatcggatggtg 33652709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 36897803 - 36897742
Alignment:
Q  375 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatg 436  Q
    ||||| |||||||||| |||||| |  ||| ||||||||||| |||||||||| ||||||||    
T  36897803 acatacatcatttatttaatgaatttaaaatgtaaatttttacttataatagtaatcggatg 36897742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 436
Target Start/End: Original strand, 14351342 - 14351403
Alignment:
Q  375 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatg 436  Q
    ||||||||||||||||||||||||   | || | ||||||||||||||||||||||||||||    
T  14351342 acatatatcatttattgaatgaacctaacaaatgaatttttatttataatagtgatcggatg 14351403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 434
Target Start/End: Complemental strand, 48860591 - 48860532
Alignment:
Q  375 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 434  Q
    ||||| ||||||||||||||||| |  |||||||||  ||||||||||||||||||||||    
T  48860591 acatacatcatttattgaatgaatttaaaaagtaaaaatttatttataatagtgatcgga 48860532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 436
Target Start/End: Original strand, 36688427 - 36688489
Alignment:
Q  374 tacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatg 436  Q
    |||||||||||||||||||||||| |  |||||| || |||||||||||||| | ||||||||    
T  36688427 tacatatatcatttattgaatgaatttaaaaagtgaaattttatttataataataatcggatg 36688489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 427
Target Start/End: Original strand, 2254028 - 2254084
Alignment:
Q  371 gactacatatatcatttattgaatgaactataaaagtaaatttttatttataatagt 427  Q
    ||||||||||||||||||||||||||| |  |||| |||| |||| |||||||||||    
T  2254028 gactacatatatcatttattgaatgaatttaaaaaataaacttttgtttataatagt 2254084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 12596755 - 12596802
Alignment:
Q  375 acatatatcatttattgaatgaactataaaagtaaatttttatttata 422  Q
    ||||||||||||||||||||||||   |||||||||||||| ||||||    
T  12596755 acatatatcatttattgaatgaacctaaaaagtaaatttttgtttata 12596802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 445
Target Start/End: Complemental strand, 52281182 - 52281109
Alignment:
Q  372 actacatatatcatttattgaatgaactataaaa-gtaaatttttatttataatagtgatcggatggtgcatatt 445  Q
    |||||||| ||||||||||||||||| ||||||| | | ||||||  |||||||||||| ||||||||| |||||    
T  52281182 actacatacatcatttattgaatgaa-tataaaatgcatatttttgcttataatagtgaccggatggtgtatatt 52281109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 429
Target Start/End: Original strand, 16578589 - 16578642
Alignment:
Q  376 catatatcatttattgaatgaactataaaagtaaatttttatttataatagtga 429  Q
    |||| |||||||||||||||||||  ||| ||| ||||||| ||||||||||||    
T  16578589 catacatcatttattgaatgaacttaaaatgtagatttttacttataatagtga 16578642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 17657982 - 17658050
Alignment:
Q  371 gactacatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtgatcggatggtg 439  Q
    ||||||||||||||||||||||||||| ||| |||| |||| ||||| |||||| | |||||| ||||||    
T  17657982 gactacatatatcatttattgaatgaatcta-aaaaataaagttttacttataacaatgatcgaatggtg 17658050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 439
Target Start/End: Complemental strand, 53176369 - 53176305
Alignment:
Q  375 acatatatcatttattgaatgaactataaaa-gtaaatttttatttataatagtgatcggatggtg 439  Q
    ||||| |||||||| |||||||| ||||||| || |||||||| ||||||||||||||||| ||||    
T  53176369 acatacatcatttaatgaatgaa-tataaaatgttaatttttacttataatagtgatcggagggtg 53176305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 429
Target Start/End: Original strand, 26636518 - 26636573
Alignment:
Q  374 tacatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtga 429  Q
    |||||| ||||||||||||||||| ||| |||| |||||||||| ||||||||||||    
T  26636518 tacatacatcatttattgaatgaatcta-aaaaataaatttttacttataatagtga 26636573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 424
Target Start/End: Complemental strand, 34937160 - 34937113
Alignment:
Q  377 atatatcatttattgaatgaactataaaa-gtaaatttttatttataat 424  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  34937160 atatatcatttattgaatgaa-tataaaatgtaaatttttgtttataat 34937113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 434
Target Start/End: Original strand, 39940561 - 39940624
Alignment:
Q  371 gactacatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtgatcgga 434  Q
    ||||||||| || |||||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  39940561 gactacatacattatttattgaatgaatcta-aaaagtaaatttttacttataatagtgatcgga 39940624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 12750559 - 12750613
Alignment:
Q  373 ctacatatatcatttattgaatgaactataaaagtaaatttttatttataatagt 427  Q
    ||||||| ||||||||||||||||| |  |||||| |||||||||||||||||||    
T  12750559 ctacatacatcatttattgaatgaatttaaaaagtcaatttttatttataatagt 12750613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 437
Target Start/End: Original strand, 47446706 - 47446772
Alignment:
Q  371 gactacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatgg 437  Q
    ||||||||| ||||||||||||||||| |  |||||| | |||||| |||||||||||| |||||||    
T  47446706 gactacatacatcatttattgaatgaatttaaaaagtgagtttttacttataatagtgaccggatgg 47446772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 434
Target Start/End: Complemental strand, 19580245 - 19580186
Alignment:
Q  375 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 434  Q
    ||||| ||||||||||||||||| | ||||||| |||||||  ||||||| |||||||||    
T  19580245 acatacatcatttattgaatgaattttaaaagtcaatttttgcttataatcgtgatcgga 19580186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 10256854 - 10256906
Alignment:
Q  381 atcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 434  Q
    ||||||||||||||||||| ||||||| || ||||  |||||||||||||||||    
T  10256854 atcatttattgaatgaact-taaaagttaaatttttcttataatagtgatcgga 10256906  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 444
Target Start/End: Original strand, 14214608 - 14214677
Alignment:
Q  375 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatggtgcatat 444  Q
    ||||| ||||||||||||||||||   |||||||| |||||  |||||||||||| |||| |||| ||||    
T  14214608 acatacatcatttattgaatgaacctaaaaagtaagtttttgcttataatagtgaccggagggtgtatat 14214677  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 425
Target Start/End: Complemental strand, 8243418 - 8243370
Alignment:
Q  377 atatatcatttattgaatgaactataaaagtaaatttttatttataata 425  Q
    |||||||| ||||| ||||||| | ||| ||||||||||||||||||||    
T  8243418 atatatcacttattaaatgaaccaaaaatgtaaatttttatttataata 8243370  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 434
Target Start/End: Complemental strand, 10256842 - 10256783
Alignment:
Q  375 acatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtgatcgga 434  Q
    ||||| ||||||||||||||||| ||| |||||| |||||||  |||||||||||||||||    
T  10256842 acatacatcatttattgaatgaatcta-aaaagtgaattttttcttataatagtgatcgga 10256783  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 439
Target Start/End: Original strand, 8256909 - 8256967
Alignment:
Q  381 atcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatggtg 439  Q
    ||||||||||||||||| |  |||||| ||||||||||||||||| |||||||| ||||    
T  8256909 atcatttattgaatgaatttaaaaagtgaatttttatttataatactgatcggagggtg 8256967  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 39836944 - 39837000
Alignment:
Q  375 acatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtgatc 431  Q
    ||||| ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  39836944 acatacatcatttattgaatgaatcta-aaaagtaaacttttatttataatagtgatc 39837000  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 42681241 - 42681187
Alignment:
Q  375 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtga 429  Q
    |||||||||||||||| |||||| |  ||| ||||||||||| ||||||||||||    
T  42681241 acatatatcatttattaaatgaatttaaaatgtaaatttttacttataatagtga 42681187  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 42787700 - 42787753
Alignment:
Q  381 atcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 434  Q
    ||||||||||||||||||   |||| | ||||||| ||||||||||||||||||    
T  42787700 atcatttattgaatgaacctaaaaaatgaatttttgtttataatagtgatcgga 42787753  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 436
Target Start/End: Original strand, 39960314 - 39960378
Alignment:
Q  372 actacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatg 436  Q
    ||||||||||||||| |||||||||| |  |||  ||||||||||||||||| ||| ||||||||    
T  39960314 actacatatatcattaattgaatgaatttaaaatataaatttttatttataacagtaatcggatg 39960378  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 434
Target Start/End: Original strand, 785627 - 785690
Alignment:
Q  371 gactacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 434  Q
    ||||||||||||||||||||||||||||   ||| || |||||||  |||||||||||| ||||    
T  785627 gactacatatatcatttattgaatgaacgtaaaatgtgaatttttccttataatagtgaccgga 785690  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 24934612 - 24934558
Alignment:
Q  375 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtga 429  Q
    ||||| ||||||||||||||||||   ||| ||||||||| ||||||||||||||    
T  24934612 acatacatcatttattgaatgaacctaaaatgtaaattttgatttataatagtga 24934558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 3106080 - 3106028
Alignment:
Q  275 gatcactattataagcattaaaccatttttaagttcattcaataaatgatgta 327  Q
    |||||||||||||| ||  |||| | ||||| |||||||||||||||||||||    
T  3106080 gatcactattataaacaaaaaacaacttttaggttcattcaataaatgatgta 3106028  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 434
Target Start/End: Original strand, 26824992 - 26825056
Alignment:
Q  370 cgactacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 434  Q
    ||||||||||| ||||||| |||||||| |  ||||  ||||||||| ||||| |||||||||||    
T  26824992 cgactacatatgtcatttaatgaatgaatttaaaaatcaaatttttacttatattagtgatcgga 26825056  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 439
Target Start/End: Original strand, 27554576 - 27554640
Alignment:
Q  375 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcggatggtg 439  Q
    ||||| |||||| |||||||| | | |||||||||||||||  ||||| ||||||||||| ||||    
T  27554576 acatacatcattaattgaatgtattttaaaagtaaatttttgcttatattagtgatcggagggtg 27554640  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 438
Target Start/End: Original strand, 30138863 - 30138930
Alignment:
Q  371 gactacatatatcatttattgaatgaactataaaa-gtaaatttttatttataatagtgatcggatggt 438  Q
    ||||| ||| |||||| |||||||||| | ||||| ||||||||||| |||||| ||||||||||||||    
T  30138863 gactatatacatcattaattgaatgaa-tctaaaatgtaaatttttacttataacagtgatcggatggt 30138930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 446
Target Start/End: Original strand, 31319591 - 31319666
Alignment:
Q  371 gactacatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtgatcggatggtgcatatta 446  Q
    ||||||||| ||||||| ||||||||| ||| |||| || ||||||  ||||||||||||||||| |||| ||||||    
T  31319591 gactacatacatcattttttgaatgaatctaaaaaa-tatatttttccttataatagtgatcggagggtgtatatta 31319666  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 15718472 - 15718528
Alignment:
Q  375 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatc 431  Q
    ||||| ||||||||||||||||| | ||||||| |||||||  ||||||||||||||    
T  15718472 acatacatcatttattgaatgaattttaaaagtgaatttttgcttataatagtgatc 15718528  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 429
Target Start/End: Complemental strand, 13841913 - 13841855
Alignment:
Q  371 gactacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtga 429  Q
    ||||| ||| ||||||||||||||||| |  ||||||||||||||  ||||||||||||    
T  13841913 gactaaatacatcatttattgaatgaatttaaaaagtaaatttttgcttataatagtga 13841855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 429
Target Start/End: Original strand, 13841923 - 13841981
Alignment:
Q  372 actacatatatcatttattgaatgaa-ctataaaagtaaatttttatttataatagtga 429  Q
    |||||||| ||||||||||||||||| ||| ||| || ||| |||||||||||||||||    
T  13841923 actacatacatcatttattgaatgaacctaaaaaggtcaatatttatttataatagtga 13841981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 434
Target Start/End: Complemental strand, 15037814 - 15037752
Alignment:
Q  372 actacatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatcgga 434  Q
    |||||||| ||||||||||||||||||   ||||||| |||||| ||||||||| ||| ||||    
T  15037814 actacatacatcatttattgaatgaacctaaaaagtagatttttgtttataatactgaccgga 15037752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 429
Target Start/End: Complemental strand, 35781287 - 35781234
Alignment:
Q  376 catatatcatttattgaatgaactataaaagtaaatttttatttataatagtga 429  Q
    |||||||||||||||||||||||   |||| |||| |||| |||||||||||||    
T  35781287 catatatcatttattgaatgaacctaaaaaataaaattttgtttataatagtga 35781234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 434
Target Start/End: Complemental strand, 6883659 - 6883627
Alignment:
Q  402 aaaagtaaatttttatttataatagtgatcgga 434  Q
    |||||||| ||||||||||||||||||||||||    
T  6883659 aaaagtaactttttatttataatagtgatcgga 6883627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 7286655 - 7286703
Alignment:
Q  377 atatatcatttattgaatgaactataaaagtaaatttttatttataata 425  Q
    ||||||||||||||||||||||   |||| || ||||||||||||||||    
T  7286655 atatatcatttattgaatgaacctaaaaaatatatttttatttataata 7286703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 431
Target Start/End: Complemental strand, 36308053 - 36307997
Alignment:
Q  375 acatatatcatttattgaatgaactataaaagtaaatttttatttataatagtgatc 431  Q
    ||||| ||||||||||||||||||   |||| | || ||||||||||||||||||||    
T  36308053 acatacatcatttattgaatgaacctaaaaaatcaacttttatttataatagtgatc 36307997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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