View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_50 (Length: 238)
Name: NF1571_high_50
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 32158341 - 32158125
Alignment:
| Q |
1 |
ttattttgtttgaatctgaacttagttattgttgatgaaatatagttaataatgctaatgttattacacaggtggatgcttttactgagttggcgttcaa |
100 |
Q |
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| T |
32158341 |
ttattttgtttgaatctgaacttagttattgttgatgaaatatagttaataatgctaatgttattacacaggtggatgcttttactgagttggcgttcaa |
32158242 |
T |
|
| Q |
101 |
ggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaacatcaatgttacctgttatttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32158241 |
ggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaacatcaatgttacctgctatttg |
32158142 |
T |
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| Q |
201 |
attcctgtcaagggaac |
217 |
Q |
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||||||||||||||||| |
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| T |
32158141 |
attcctgtcaagggaac |
32158125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 27325273 - 27325191
Alignment:
| Q |
96 |
ttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaa |
178 |
Q |
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||||| ||||| || |||||||||||||| ||||| |||| || ||||||||||||||||||| |||||| ||||| ||||| |
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| T |
27325273 |
ttcaaagggaatccagcagcagtgtgtttcttagaagaagataaagatgatgaatggttgcaagcattagctgctgaattcaa |
27325191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 27358142 - 27358252
Alignment:
| Q |
68 |
acaggtggatgcttttactgagttggcgttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagca |
167 |
Q |
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| T |
27358142 |
acaggtggatgcattcactgagacagcattcaaagggaatccagcagcagtatgtttattagaagaagataaagatgatgaatggttgcaagcattagct |
27358241 |
T |
|
| Q |
168 |
gctgagttcaa |
178 |
Q |
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|||||||||| |
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| T |
27358242 |
tctgagttcaa |
27358252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 27350303 - 27350221
Alignment:
| Q |
96 |
ttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaa |
178 |
Q |
| |
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||||| ||||| || |||||||||||||| ||||| |||| || |||||||||||||||||| |||||| ||||| ||||| |
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| T |
27350303 |
ttcaaagggaatccagcagcagtgtgtttcttagaagaagataaagatgatgaatggttgcaatcattagctgctgaattcaa |
27350221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 32169148 - 32169062
Alignment:
| Q |
96 |
ttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaacatc |
182 |
Q |
| |
|
||||| ||||| || |||||||||||||| |||| |||| || |||||||||||||||||| || |||| ||||| ||||||||| |
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| T |
32169148 |
ttcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctgctgaattcaacatc |
32169062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 32165357 - 32165271
Alignment:
| Q |
96 |
ttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaacatc |
182 |
Q |
| |
|
||||| ||||| || ||||| |||||||| ||||| |||| || |||||||||||||||||| | |||| ||||| ||||||||| |
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| T |
32165357 |
ttcaaagggaatccagcagctgtgtgtttattagaagaagataaagatgatgaatggttgcaatcagtagctgctgaattcaacatc |
32165271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 44288205 - 44288314
Alignment:
| Q |
69 |
caggtggatgcttttactgagttggcgttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcag |
168 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||| |
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| T |
44288205 |
caggtggatgctttcactgagtcagcgttcaagggaaaccctgcagcagtgtgtttgttagaagaagagagggatgatgaatggttgcaagcattagcag |
44288304 |
T |
|
| Q |
169 |
ctgagttcaa |
178 |
Q |
| |
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|||||||||| |
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|
| T |
44288305 |
ctgagttcaa |
44288314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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