View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_high_51 (Length: 237)
Name: NF1571_high_51
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_high_51 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 19401853 - 19401634
Alignment:
| Q |
1 |
tgatgtaaattttttatttactattttgtcaataatgtcaatactatcatttttatcactttctgaaaattcttaatatagttttattgatgttactttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19401853 |
tgatgtaaattttttatttactattttgtcaataatgtcaatactatcatttttatcactttctgaaaattcttaatatagttttattgatgttactttt |
19401754 |
T |
|
| Q |
101 |
caactgcaatcaaagtttctacttaaactcatctacaaccatctccataaactgataataaaaagaagtaatccactttctccataaaatgagaacatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19401753 |
caactgcaatcaaagtttctacttaaactcatctacaaccatctccataaactgataataaaaagaagtaatccactttctccataaaatgagaacatta |
19401654 |
T |
|
| Q |
201 |
tccaaaatcactacatttaa |
220 |
Q |
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|||||||||||||||||||| |
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| T |
19401653 |
tccaaaatcactacatttaa |
19401634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 18018068 - 18018003
Alignment:
| Q |
1 |
tgatgtaaattttttatttactattttgtcaataatgtca--atactatcatttttatcactttct |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18018068 |
tgatgtaaattttttatttactattttgtcaataatgtcaacatactatcatttttatcactttct |
18018003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 17951957 - 17951899
Alignment:
| Q |
43 |
actatcatttttatcactttctgaaaattcttaatatagttttattgatgttacttttc |
101 |
Q |
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|
| T |
17951957 |
actatcatttttatcactttctgaaaagtctgaaaatagtttaattgatgttacttttc |
17951899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 18110570 - 18110522
Alignment:
| Q |
54 |
tatcactttctgaaaattcttaatatagttttattgatgttacttttca |
102 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
18110570 |
tatcactttctgaaaattctgaaaatagttttattgatgttacttttca |
18110522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 17951741 - 17951703
Alignment:
| Q |
182 |
ccataaaatgagaacattatccaaaatcactacatttaa |
220 |
Q |
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| T |
17951741 |
ccataaaatgagaacattatccaaaatcactacatttaa |
17951703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 19377563 - 19377528
Alignment:
| Q |
154 |
gataataaaaagaagtaatccactttctccataaaa |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
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|
| T |
19377563 |
gataataaaaagaagtaatccactttctccacaaaa |
19377528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 184
Target Start/End: Complemental strand, 18017954 - 18017924
Alignment:
| Q |
154 |
gataataaaaagaagtaatccactttctcca |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
18017954 |
gataataaaaagaagtaatccactttctcca |
18017924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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