View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1571_low_1 (Length: 757)

Name: NF1571_low_1
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1571_low_1
NF1571_low_1
[»] chr1 (10 HSPs)
chr1 (19-745)||(29443488-29444205)
chr1 (20-393)||(29453472-29453836)
chr1 (388-742)||(29422520-29422877)
chr1 (576-742)||(29454043-29454209)
chr1 (23-208)||(29423051-29423236)
chr1 (20-393)||(29467948-29468316)
chr1 (236-388)||(29422909-29423052)
chr1 (388-710)||(29468341-29468637)
chr1 (468-538)||(29453922-29453990)
chr1 (637-710)||(29473678-29473751)
[»] chr2 (45 HSPs)
chr2 (224-368)||(12012927-12013063)
chr2 (224-393)||(11987865-11988026)
chr2 (593-745)||(12019598-12019750)
chr2 (224-393)||(12019266-12019425)
chr2 (576-745)||(12006934-12007104)
chr2 (165-305)||(10371511-10371648)
chr2 (211-364)||(9315639-9315784)
chr2 (181-305)||(9284540-9284665)
chr2 (181-305)||(9294990-9295115)
chr2 (163-393)||(9065937-9066172)
chr2 (211-393)||(9320566-9320736)
chr2 (180-391)||(9364210-9364409)
chr2 (165-279)||(10347462-10347575)
chr2 (305-393)||(9291533-9291617)
chr2 (211-305)||(9328262-9328355)
chr2 (305-393)||(12006544-12006634)
chr2 (51-109)||(9061358-9061416)
chr2 (51-161)||(9291755-9291865)
chr2 (576-695)||(11988111-11988229)
chr2 (249-368)||(8573931-8574044)
chr2 (305-368)||(10352726-10352789)
chr2 (50-109)||(16268953-16269012)
chr2 (20-146)||(10335704-10335830)
chr2 (85-155)||(12019121-12019191)
chr2 (20-161)||(9315852-9315993)
chr2 (384-449)||(9364086-9364151)
chr2 (41-158)||(9364464-9364581)
chr2 (51-148)||(10371683-10371780)
chr2 (224-261)||(12006496-12006533)
chr2 (50-161)||(12012750-12012858)
chr2 (41-161)||(9284379-9284499)
chr2 (48-108)||(9320868-9320928)
chr2 (211-305)||(9061545-9061636)
chr2 (165-252)||(10335584-10335670)
chr2 (50-161)||(11987685-11987796)
chr2 (51-109)||(8573725-8573783)
chr2 (305-378)||(10335412-10335485)
chr2 (51-108)||(10347650-10347707)
chr2 (305-392)||(9274161-9274241)
chr2 (50-109)||(8579703-8579762)
chr2 (329-368)||(9328216-9328255)
chr2 (27-109)||(9065789-9065871)
chr2 (327-393)||(10347365-10347430)
chr2 (386-419)||(9274094-9274127)
chr2 (386-431)||(10352630-10352675)
[»] chr3 (1 HSPs)
chr3 (242-394)||(37462064-37462205)
[»] scaffold0667 (1 HSPs)
scaffold0667 (213-368)||(4061-4208)
[»] chr8 (2 HSPs)
chr8 (178-367)||(41967067-41967247)
chr8 (55-161)||(41966911-41967017)
[»] chr4 (1 HSPs)
chr4 (305-368)||(26574512-26574575)
[»] chr7 (2 HSPs)
chr7 (51-109)||(45230293-45230351)
chr7 (51-109)||(45243555-45243613)


Alignment Details
Target: chr1 (Bit Score: 666; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 19 - 745
Target Start/End: Original strand, 29443488 - 29444205
Alignment:
Q  19 agaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443488 agaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatc 29443587  T
Q  119 atgccatcatttgtgttggaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagtttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443588 atgccatcatttgtgttggaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagtttt 29443687  T
Q  219 ttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443688 ttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcat 29443787  T
Q  319 aggacaattattctctaattattttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgctatgtgttggtttatgagttgacctt 418  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  29443788 aggacaaggattctctaattattttgaagtctctacctttgtttatgtatgtgtatttgac---------atgctatgtgttggtttatgagttgacctt 29443878  T
Q  419 gtgaatagctaaactcaaccctcctctcttgaggaaaaaatattaagttagacaaaaggaatttgcaggattcctttactttaaaagtaggctaaataaa 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443879 gtgaatagctaaactcaaccctcctctcttgaggaaaaaatattaagttagacaaaaggaatttgcaggattcctttactttaaaagtaggctaaataaa 29443978  T
Q  519 taatatttgtatgagttggtannnnnnnccgtcattagttgagaatcctcactatgatgtcaaacttatttcgaaatgttgagactgttcaaccttgtcg 618  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443979 taatatttgtatgagttggtatttttttccgtcattagttgagaatcctcactatgatgtcaaacttatttcgaaatgttgagactgttcaaccttgtcg 29444078  T
Q  619 ttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctatgtataagtcctttcaaaatatttatt 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29444079 ttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctatgtataagtcctttcaaaatatttatt 29444178  T
Q  719 ttttgatcactattcttttgtgatatt 745  Q
    |||||||||||||||||||||||||||    
T  29444179 ttttgatcactattcttttgtgatatt 29444205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 20 - 393
Target Start/End: Original strand, 29453472 - 29453836
Alignment:
Q  20 gaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatca 119  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||   ||||||| |||||||||||||||||   | |||||    
T  29453472 gaagtatggttctgttggaagtagattgtgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttgaaggaattcctaatttcgatca 29453571  T
Q  120 tgccatcatttgtgttggaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttt 219  Q
     || || |||||||||||||||||||| | |||||| ||||||||||| |||||| | ||||||||||||||||||| |||||| |||| ||||||||||    
T  29453572 agctatgatttgtgttggaagtcttgtgccaccttccttccccaggaaagagaattatacaagcaagagaaggtactccttatttattatctgagttttt 29453671  T
Q  220 tctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcata 319  Q
     || ||||||||||||| ||| |||||| || ||||||||||||||||  |||||||||  ||||||||||   ||||       ||||||||||| |||    
T  29453672 gctctgtataagttaatttcagttcaatagatccatcatatgatatatgcagttaaactttatgttaaaag--taaat-------tgaattcttattata 29453762  T
Q  320 ggacaattattctctaattattttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgct 393  Q
    | ||||  |||||||||||| ||||||||||||||||  |||||||||| | |||  |||||||||||||||||    
T  29453763 gaacaaggattctctaattactttgaagtctctacctaagtttatgtatatctatccgacaatgtgtgtatgct 29453836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 388 - 742
Target Start/End: Complemental strand, 29422877 - 29422520
Alignment:
Q  388 tatgctatgtgttggtttatgagttgaccttgtgaatagctaaactcaaccctcctctcttgaggaaaaaatattaagttagacaaaaggaatttgcagg 487  Q
    |||||||||||| ||||||||||||||||  |||| ||||||||||| |||||||||||  ||| ||||||||| |||||| || |||||| ||||||||    
T  29422877 tatgctatgtgtaggtttatgagttgacccagtgactagctaaactccaccctcctctc--gagtaaaaaatatcaagttaaaccaaagga-tttgcagg 29422781  T
Q  488 attcctttactttaaaagtaggctaaataaataatatttgtatgagttggtannnnnnnccgtcattagttgagaa-tcctcactatga----------- 575  Q
    |||||||| ||||| ||||| | ||| ||||||||||| ||||||||||||        || |||||||||| ||| ||||  ||||||               
T  29422780 attcctttgctttagaagtatgttaattaaataatattggtatgagttggtctttttttccttcattagttgtgaaatccttgctatgaaataattattt 29422681  T
Q  576 tgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatga 675  Q
    |||||||||||||||| |||||||||||| ||||||| |||||| ||||||||||      |||||| |||||||||| |||||||||||||||||||||    
T  29422680 tgtcaaacttatttcggaatgttgagactattcaaccctgtcgtggtatctatgt------ggataagaacattgttgggtagaaatttgcctgcaatga 29422587  T
Q  676 atttactcaaaatctatgtataagtcctttcaaaatatttattttttgatcactattcttttgtgat 742  Q
    | |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  29422586 aattactcaaaatctatgtacaagtcctttcaaaatatttatttttttatcactattcttttgtgat 29422520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 576 - 742
Target Start/End: Original strand, 29454043 - 29454209
Alignment:
Q  576 tgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatga 675  Q
    |||||||||||||||| ||||||||| || ||| ||| ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29454043 tgtcaaacttatttcggaatgttgagtctattccaccctgttgtggtatctatgtatttaaggataagaacattgttgtgtagaaatttgcctgcaatga 29454142  T
Q  676 atttactcaaaatctatgtataagtcctttcaaaatatttattttttgatcactattcttttgtgat 742  Q
    | |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  29454143 aattactcaaaatctatgtacaagtcctttcaaaatatttatttttttatcactattcttttgtgat 29454209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 29423236 - 29423051
Alignment:
Q  23 gtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgc 122  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||| |||| ||||||||||||   | ||||| ||    
T  29423236 gtatggttctgttgcaagtagatcctgagaagctgttttggtatgatctcaagagtgaacaagttagttgtgttcaaggaattcctaatttcgatcaagc 29423137  T
Q  123 catcatttgtgttggaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgatta 208  Q
    ||| |||||||||||||||||||||  |||||| ||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  29423136 catgatttgtgttggaagtcttgtatcaccttccttccctaggaaggagaatcgcacaagcaagagaaggtacttcttattgatta 29423051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 20 - 393
Target Start/End: Original strand, 29467948 - 29468316
Alignment:
Q  20 gaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatca 119  Q
    ||||||||||||||||  ||||||| | ||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||||||||   || || |    
T  29467948 gaagtatggttctgtttgaagtagaccatgagaagttgttttggtatgatctcaagagtgaacatgttaattatgttgaaggaattcctaatttgaatga 29468047  T
Q  120 tgccatcatttgtgttggaagtcttgtacaaccttctttccccaggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttt 219  Q
     || || |||||||||||||||||||||| |||||| ||||| ||||| |||||||  ||||||||||||||||||||||||||||||  ||||||||||    
T  29468048 agctatgatttgtgttggaagtcttgtaccaccttccttccctaggaacgagaatcgcacaagcaagagaaggtacttcttattgattgtctgagttttt 29468147  T
Q  220 t---------ctttgtataagttaatatca-attcaatggacccatc-----atatgatatatctagttaaactccatgttaaaaggtcaaattgaattc 304  Q
    |          | ||||||||||||||||| | | |||||||| |||     |||||||||||  ||||||||||  ||||||||||||||||           
T  29468148 tgagtttttgttatgtataagttaatatcacagttaatggacctatcatatgatatgatatatgcagttaaactc--tgttaaaaggtcaaat------- 29468238  T
Q  305 tgaattcttatcataggacaattattctctaattattttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgct 393  Q
    ||||||||||| |||||||||| |||||||||||||||            |||||||||||||| ||||||||||||||||||||||||    
T  29468239 tgaattcttattataggacaatgattctctaattattt-----------actttgtttatgtatatgtatttgacaatgtgtgtatgct 29468316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 236 - 388
Target Start/End: Complemental strand, 29423052 - 29422909
Alignment:
Q  236 tatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctcta 335  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||       ||| ||| |||||| ||||||||    
T  29423052 tatcaattcaatggaccgatcatatgatatatctagttaaactc--tgttaaaaggtcaaattgaattct-------tattatatgacaatgattctcta 29422962  T
Q  336 attattttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgt 388  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  29422961 attattttgaagtctctacctttgtttatgtatatgtatttgacattgtgtgt 29422909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 388 - 710
Target Start/End: Original strand, 29468341 - 29468637
Alignment:
Q  388 tatgctatgtgttggtttatgagttgaccttgtgaatagctaaactcaaccctcctctcttgaggaaaaaatattaagttagacaaaaggaatttgcagg 487  Q
    |||||||||||| |||||||||||||||||||||| | |||||||||||||||         ||||||||||||||||||||||||||||| ||||||||    
T  29468341 tatgctatgtgtaggtttatgagttgaccttgtgactggctaaactcaaccct---------aggaaaaaatattaagttagacaaaagga-tttgcagg 29468430  T
Q  488 attcctttactttaaaagtaggctaaataaataatatttgtatgagttggtannnnnnnccgtcattagttgagaatcctcactatgatgtcaaacttat 587  Q
    |||||||||||||||| ||||| | | || |||||||| ||||||||||||        || ||||| |||||| |||||||||| ||||||||||||||    
T  29468431 attcctttactttaaatgtaggttgagtatataatattggtatgagttggtctttttttccttcattggttgag-atcctcactacgatgtcaaacttat 29468529  T
Q  588 ttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaa 687  Q
    || ||||         ||||| ||| |||| | | ||||||||      |||||| ||||||||||||||||||||||| ||||||||  ||| || |||    
T  29468530 tttgaaa---------tgttcgaccctgtcatggcatctatgt------ggataagaacattgttgtgtagaaatttgcatgcaatgagattattccaaa 29468614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 468 - 538
Target Start/End: Original strand, 29453922 - 29453990
Alignment:
Q  468 agacaaaaggaatttgcaggattcctttactttaaaagtaggctaaataaataatatttgtatgagttggt 538  Q
    ||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||| ||||||||||||    
T  29453922 agacaaaagga-tttgcaggattc-tttaatttaaaagtaggttaaataaataatattggtatgagttggt 29453990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 637 - 710
Target Start/End: Original strand, 29473678 - 29473751
Alignment:
Q  637 ggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctatgtataagtcctttcaaaa 710  Q
    |||||| ||||||||||||||||||||||| ||||||||  ||| || |||||||||||||| || ||||||||    
T  29473678 ggataagaacattgttgtgtagaaatttgcatgcaatgagattattccaaatctatgtataattcatttcaaaa 29473751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 3e-41; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 224 - 368
Target Start/End: Original strand, 12012927 - 12013063
Alignment:
Q  224 tgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggac 323  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||       ||||||||||| |||||||    
T  12012927 tgtataagttaatatcaattcaatggacccatcatatgatatatgtagttagactccatgtt-aaaggtcaaat-------tgaattcttattataggac 12013018  T
Q  324 aattattctctaattattttgaagtctctacctttgtttatgtat 368  Q
    ||  |||||||||||| ||||||||||||||||||||||||||||    
T  12013019 aaggattctctaattactttgaagtctctacctttgtttatgtat 12013063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 224 - 393
Target Start/End: Original strand, 11987865 - 11988026
Alignment:
Q  224 tgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggac 323  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||  ||||| |||||||||||       ||||||| ||| |||||||    
T  11987865 tgtataagttaatatcaattcaatggacccatcatgtgatatatgtagttaaactttatgtt-aaaggtcaaat-------tgaattcctattataggac 11987956  T
Q  324 aattattctctaattattttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgct 393  Q
    ||  ||| |||||||| |||||||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  11987957 aaggattttctaattactttgaagtctctacctttgtttatgtatatatatttgacaatgtctgtatgct 11988026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 593 - 745
Target Start/End: Original strand, 12019598 - 12019750
Alignment:
Q  593 aatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatgaatttactcaaaatctat 692  Q
    |||||||||||| ||| ||| ||| || |||||| ||||||||||||||| || |||||||||||||||||| ||||||||||| |||||| ||||||||    
T  12019598 aatgttgagactattccaccctgttgtggtatctgtgtatttaaggataagaatattgttgtgtagaaatttacctgcaatgaa-ttactccaaatctat 12019696  T
Q  693 gtataagtcctttcaaaatatttat-tttttgatcactattcttttgtgatatt 745  Q
    |||||| |||||||||||||||||| || || |||||||||| |||||||||||    
T  12019697 gtataattcctttcaaaatatttatattatttatcactattcatttgtgatatt 12019750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 224 - 393
Target Start/End: Original strand, 12019266 - 12019425
Alignment:
Q  224 tgtataagttaatatc-aattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcatagga 322  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||||||          || |||  |||||||||| ||||||    
T  12019266 tgtataagttaacatccaattcaatggacccatcatatgatatatgtagttaaactctatgttaa----------tgtattg-gaattcttattatagga 12019354  T
Q  323 caattattctctaattattttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgct 393  Q
    |||  |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12019355 caaggattctctaattactttgaagtctctacctttgtttatgtatatgtatttgacaatgtgtgtatgct 12019425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 576 - 745
Target Start/End: Original strand, 12006934 - 12007104
Alignment:
Q  576 tgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtgtagaaatttgcctgcaatga 675  Q
    ||||||||||||||| ||||||||||| | ||| ||| ||| || |||||| ||||||||||||||| || |||||| ||||||||||| |||  |||||    
T  12006934 tgtcaaacttatttcaaaatgttgagattattccaccctgttgtggtatctgtgtatttaaggataagaatattgttctgtagaaatttacctttaatga 12007033  T
Q  676 atttactcaaaatctatgtataagtcctttcaaaatatttat-tttttgatcactattcttttgtgatatt 745  Q
    | |||||| || ||||||||||| |||||||||||||||||| || || |||||||||| | |||||||||    
T  12007034 aattactccaactctatgtataattcctttcaaaatatttatattatttatcactattcatctgtgatatt 12007104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 165 - 305
Target Start/End: Complemental strand, 10371648 - 10371511
Alignment:
Q  165 gaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgata 264  Q
    |||||||||||| |||||||||||||||||||| || ||  ||| ||||||||||  | ||||||||||||||||| ||||||||| ||||||||| |||    
T  10371648 gaaggagaatcatacaagcaagagaaggtacttattgtt--ttaactgagtttttgttgtgtataagttaatatcagttcaatggatccatcatattata 10371551  T
Q  265 tatctagttaaactccatgttaaaaggtcaaattgaattct 305  Q
    |||  ||||||||||  |||| |||||||||||||||||||    
T  10371550 tatgcagttaaactctgtgtt-aaaggtcaaattgaattct 10371511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 211 - 364
Target Start/End: Complemental strand, 9315784 - 9315639
Alignment:
Q  211 tgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaatt 310  Q
    ||||||||| || ||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||| ||| | |||||||||||       ||||||    
T  9315784 tgagtttttgctatgtataagttaatgtcagttcaatggacccatcatatgatataagtagttaaactctatgct-aaaggtcaaat-------tgaatt 9315693  T
Q  311 cttatcataggacaattattctctaattattttgaagtctctacctttgtttat 364  Q
    ||||| |||||||||  |||| ||||||| ||| || |||||||||||||||||    
T  9315692 cttattataggacaaggattccctaattactttaaattctctacctttgtttat 9315639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 181 - 305
Target Start/End: Original strand, 9284540 - 9284665
Alignment:
Q  181 agcaagagaaggtacttctt-attgattacctgagtttttt-ctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaact 278  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| | | || |||||||||||||||| || ||| ||||||||||    
T  9284540 agcaagagaaggtacttctttattgattatctgagttttttgctttgtataagttaattttagtttaatggacccatcatataatttatgtagttaaact 9284639  T
Q  279 ccatgttaaaaggtcaaattgaattct 305  Q
      || || |||||||||||||||||||    
T  9284640 ttatatt-aaaggtcaaattgaattct 9284665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 181 - 305
Target Start/End: Original strand, 9294990 - 9295115
Alignment:
Q  181 agcaagagaaggtacttctt-attgattacctgagtttttt-ctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaact 278  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| | | || |||||||||||||||| || ||| | ||||||||    
T  9294990 agcaagagaaggtacttctttattgattatctgagttttttgctttgtataagttaattttagtttaatggacccatcatataatttatgtggttaaact 9295089  T
Q  279 ccatgttaaaaggtcaaattgaattct 305  Q
    | ||| | |||||||||||||||||||    
T  9295090 ctatgct-aaaggtcaaattgaattct 9295115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 163 - 393
Target Start/End: Original strand, 9065937 - 9066172
Alignment:
Q  163 aggaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagtttt-------ttctttgtataagttaatatcaattcaatggaccca- 254  Q
    ||||||||||||| ||||| ||||||||||||||||||||| |||  || ||||||       | ||||||| |||||||||||| |||||||||||||     
T  9065937 aggaaggagaatcgaacaaccaagagaaggtacttcttatttattttctaagttttgagttcttgctttgtacaagttaatatcagttcaatggacccaa 9066036  T
Q  255 -------tcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctctaattattttgaag 347  Q
           ||||||||||||| ||| ||||||   || | || |||||||||||| |||       |||||||||| ||  |||||||||||| |||||||    
T  9066037 tgacccatcatatgatatatgtagctaaactt--tgctcaa-ggtcaaattgaagtct-------tatcataggataaagattctctaattactttgaag 9066126  T
Q  348 tctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgct 393  Q
    | ||||||||||||||||||  ||||||||||||||||||||||||    
T  9066127 tttctacctttgtttatgtacatgtatttgacaatgtgtgtatgct 9066172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 211 - 393
Target Start/End: Complemental strand, 9320736 - 9320566
Alignment:
Q  211 tgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaatt 310  Q
    ||||||||| || ||||| |||| || ||||||||||||||||||||||||||||||  |||||||||| ||| | | |||||||||       ||||||    
T  9320736 tgagtttttgctatgtattagttgatgtcaattcaatggacccatcatatgatatattaagttaaactctatgct-ataggtcaaat-------tgaatt 9320645  T
Q  311 cttatcataggacaattattctctaattattttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgct 393  Q
     |||| || ||||||  || ||||||||| ||||||||||||||||||||||| |||    ||| ||||||||||||||||||    
T  9320644 tttattatcggacaaggatactctaattactttgaagtctctacctttgtttacgta----tatgtgacaatgtgtgtatgct 9320566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 180 - 391
Target Start/End: Complemental strand, 9364409 - 9364210
Alignment:
Q  180 aagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactc 279  Q
    |||||||||||||||||| || || ||   |||||| ||| || |||||||| || ||||  ||||||| |||||||||||||||||| || ||||||||    
T  9364409 aagcaagagaaggtacttgttgtttat---ctgagtctttgctgtgtataagcta-tatccgttcaatgaacccatcatatgatatatgtacttaaactc 9364314  T
Q  280 catgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctctaattattttgaagtctctacctttgtttatgtatgtgtatttgac 379  Q
     || ||||| |||||||| |||||||       ||| |||||||||  | |||||||||| |||||||||| ||||||||||||||||| ||||| |||     
T  9364313 tatattaaa-ggtcaaatggaattct-------tattataggacaaggagtctctaattactttgaagtctatacctttgtttatgtatatgtatctgag 9364222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 10347575 - 10347462
Alignment:
Q  165 gaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgata 264  Q
    ||||||||||||  |||||||||||||||||||||||||| ||| ||||||||||  | |||||||||| |||||| ||||||||||  ||||||| |||    
T  10347575 gaaggagaatcatccaagcaagagaaggtacttcttattgtttaactgagtttttgttgtgtataagtt-atatcagttcaatggacttatcatatcata 10347477  T
Q  265 tatctagttaaactc 279  Q
    |||  ||||||||||    
T  10347476 tatgcagttaaactc 10347462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 305 - 393
Target Start/End: Complemental strand, 9291617 - 9291533
Alignment:
Q  305 tgaattcttatcataggacaattattctctaattattttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgct 393  Q
    ||||||||||| |||||||||  |||||||||||| |||||||||||||||||||||||||||    ||| ||||||||||||||||||    
T  9291617 tgaattcttattataggacaaggattctctaattactttgaagtctctacctttgtttatgta----tatgtgacaatgtgtgtatgct 9291533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 9328355 - 9328262
Alignment:
Q  211 tgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattct 305  Q
    ||||||||| || |||||||||| || |||||||||||||||| |||||||||||||  |||||||||| ||| | |||||||||||||||||||    
T  9328355 tgagtttttgctatgtataagttgatgtcaattcaatggacccgtcatatgatatatgaagttaaactctatgct-aaaggtcaaattgaattct 9328262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 305 - 393
Target Start/End: Original strand, 12006544 - 12006634
Alignment:
Q  305 tgaattcttatcataggacaattattctctaattattttgaagtctctacctttgtttatgtatgt--gtatttgacaatgtgtgtatgct 393  Q
    |||||||||||  ||||||||  |||||||||||| |||||||||||||||||||||||||||| |  |||||||||  ||||||||||||    
T  12006544 tgaattcttattttaggacaaggattctctaattactttgaagtctctacctttgtttatgtatataagtatttgactctgtgtgtatgct 12006634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 9061358 - 9061416
Alignment:
Q  51 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 109  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  9061358 gaagctgttttggtatgatctcaagagtgaacaagttagttatgttgaaggaattccta 9061416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 9291865 - 9291755
Alignment:
Q  51 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaa 150  Q
    ||||||||||||||||||| | |||||||||    ||||||||||||||||||||||||   ||||| | || || |||||||||| ||||||| ||| |    
T  9291865 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaagtcttctacca 9291766  T
Q  151 ccttctttccc 161  Q
    ||||| |||||    
T  9291765 ccttccttccc 9291755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 576 - 695
Target Start/End: Original strand, 11988111 - 11988229
Alignment:
Q  576 tgtcaaacttatttcgaaatgttgagactgttcaaccttgtcgttgtatctatgtatttaaggataaaaacattgttgtg-tagaaatttgcctgcaatg 674  Q
    |||||||||||||||||||||||| |||| ||| ||| ||| || |||||| ||||  ||||||||| ||| |||||||| ||||||||| | |||||||    
T  11988111 tgtcaaacttatttcgaaatgttgtgactattctaccctgttgtggtatctgtgta--taaggataagaacgttgttgtgttagaaattttcttgcaatg 11988208  T
Q  675 aatttactcaaaatctatgta 695  Q
    || | |||| ||||| |||||    
T  11988209 aaataactccaaatcaatgta 11988229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 249 - 368
Target Start/End: Original strand, 8573931 - 8574044
Alignment:
Q  249 gacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctctaattattttgaagt 348  Q
    ||||||||||||||||||| | ||||||||| ||| |||| ||||||||| |||||| |     |  ||||||||||  |||||||||||| ||||||||    
T  8573931 gacccatcatatgatatatgtggttaaactctatgctaaa-ggtcaaattaaattctta-----tcacataggacaaggattctctaattactttgaagt 8574024  T
Q  349 ctctacctttgtttatgtat 368  Q
     | |||||||||||||||||    
T  8574025 ttatacctttgtttatgtat 8574044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 10352789 - 10352726
Alignment:
Q  305 tgaattcttatcataggacaattattctctaattattttgaagtctctacctttgtttatgtat 368  Q
    |||||||||||||||||| ||  |||||||||||| ||||| |||| |||||||||||||||||    
T  10352789 tgaattcttatcataggataaggattctctaattactttgacgtctttacctttgtttatgtat 10352726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 16269012 - 16268953
Alignment:
Q  50 agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 109  Q
    ||||| |||||||||||||| | ||||||||| | |||||||||||||||||||||||||    
T  16269012 agaagttgttttggtatgatttgaagagtgaacgagttagttatgttgaaggaattccta 16268953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 10335830 - 10335704
Alignment:
Q  20 gaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatca 119  Q
    |||||| |||||| ||| || | ||| || ||||| |||||||||||||| | |||||||||    ||||||||||||||||||||||||   ||||| |    
T  10335830 gaagtaaggttctattggaaatcgattgtaagaagttgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcctaatttggatga 10335731  T
Q  120 tgccatcatttgtgttggaagtcttgt 146  Q
      | || ||||||||||||||||||||    
T  10335730 cactatgatttgtgttggaagtcttgt 10335704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 12019121 - 12019191
Alignment:
Q  85 gttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaaccttc 155  Q
    |||||||||||||||||||||||||   | ||| | ||||| |||||||||||||||||||||| ||||||    
T  12019121 gttagttatgttgaaggaattcctaatttcgatgaagccatgatttgtgttggaagtcttgtaccaccttc 12019191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 9315993 - 9315852
Alignment:
Q  20 gaagtatggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatca 119  Q
    |||||| |||||| ||| || ||||| || ||||||||||||||| |||  | | |||||||   |||| |||||||||||||||| |||   ||||| |    
T  9315993 gaagtaaggttctattggaaatagattgtaagaagctgttttggtgtgacttgatgagtgaacaagttatttatgttgaaggaatttctaatttggatga 9315894  T
Q  120 tgccatcatttgtgttggaagtcttgtacaaccttctttccc 161  Q
     || || |||||||||| ||||||||||| |||||| |||||    
T  9315893 agctatgatttgtgttgaaagtcttgtaccaccttccttccc 9315852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 384 - 449
Target Start/End: Complemental strand, 9364151 - 9364086
Alignment:
Q  384 tgtgtatgctatgtgttggtttatgagttgaccttgtgaatagctaaactcaaccctcctctcttg 449  Q
    |||||||| ||||||| |||||| ||||||||||||||| ||||| || || ||||||||||||||    
T  9364151 tgtgtatgttatgtgtcggtttaagagttgaccttgtgactagctgaagtccaccctcctctcttg 9364086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 9364581 - 9364464
Alignment:
Q  41 tagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaag 140  Q
    |||||||| |||||||||||||||| |||||||||||||||   |||| |  ||||  |||||||||||   || || | || || ||||||||||| ||    
T  9364581 tagatcgtaagaagctgttttggtacgatctcaagagtgaaaacgttactagtgttccaggaattcctaatatgaatgaagctatgatttgtgttggtag 9364482  T
Q  141 tcttgtacaaccttcttt 158  Q
    |||||||| |||||||||    
T  9364481 tcttgtaccaccttcttt 9364464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 10371780 - 10371683
Alignment:
Q  51 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtac 148  Q
    ||||||||||||||||||| | |||||||||   ||||||||||||||||||| | |||   ||||| |||| ||  |||||||||| ||||||||||    
T  10371780 gaagctgttttggtatgatttgaagagtgaacaagttagttatgttgaaggaaattctaatttggatgatgctatggtttgtgttggtagtcttgtac 10371683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 12006496 - 12006533
Alignment:
Q  224 tgtataagttaatatcaattcaatggacccatcatatg 261  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12006496 tgtataagttaatatcaattcaatggacccatcatatg 12006533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 12012750 - 12012858
Alignment:
Q  50 agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtaca 149  Q
    |||||||| ||||||||||| | |||||| ||   |||||||||||||||||||||||||   | ||| | || || ||||||||||||||||||||||     
T  12012750 agaagctggtttggtatgatttgaagagtcaa---gttagttatgttgaaggaattcctaatttcgatgaagctatgatttgtgttggaagtcttgtacc 12012846  T
Q  150 accttctttccc 161  Q
    ||| || |||||    
T  12012847 accctccttccc 12012858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 9284379 - 9284499
Alignment:
Q  41 tagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaag 140  Q
    ||||| || |||||||| ||||||||||| | ||||||||    |||| ||||||||||||||||||||   ||||| | || || |||||||||| |||    
T  9284379 tagattgtaagaagctggtttggtatgatttgaagagtgagcaagttatttatgttgaaggaattcctaatttggatgaagctatgatttgtgttgaaag 9284478  T
Q  141 tcttgtacaaccttctttccc 161  Q
    |||||| | |||||| |||||    
T  9284479 tcttgtgccaccttccttccc 9284499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 9320928 - 9320868
Alignment:
Q  48 tgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcct 108  Q
    |||||||||||||||||||||| | ||||||| |   ||||||||||||||||||||||||    
T  9320928 tgagaagctgttttggtatgatttgaagagtgcacaagttagttatgttgaaggaattcct 9320868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 9061545 - 9061636
Alignment:
Q  211 tgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattct 305  Q
    ||||||||| || |||||||||| || ||| ||||||||  ||||||||| |||||| ||||||||||| ||| | |||||| ||||||||||||    
T  9061545 tgagtttttgctatgtataagttgatgtcagttcaatgg--ccatcatataatatatgtagttaaactctatgct-aaaggttaaattgaattct 9061636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 10335670 - 10335584
Alignment:
Q  165 gaaggagaatcaaacaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacc 252  Q
    |||| ||||||  ||||||||| ||||||||||||||||| ||  ||||||||||  | |||||||||| |||||| |||||||||||    
T  10335670 gaagcagaatcgtacaagcaagggaaggtacttcttattgtttgactgagtttttgttgtgtataagtt-atatcagttcaatggacc 10335584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 11987685 - 11987796
Alignment:
Q  50 agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtaca 149  Q
    |||||||| ||||||||||| | |||||||||    ||||||||||||| ||||||||||   | ||| | || || ||||||||||||||||||||||     
T  11987685 agaagctggtttggtatgatttgaagagtgaacaatttagttatgttgacggaattcctaaattcgatgaagctatgatttgtgttggaagtcttgtacc 11987784  T
Q  150 accttctttccc 161  Q
    ||| || |||||    
T  11987785 accctccttccc 11987796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 8573725 - 8573783
Alignment:
Q  51 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 109  Q
    ||||||||||||||||||| | |||||||||   || ||||||||||||||||||||||    
T  8573725 gaagctgttttggtatgatttgaagagtgaacaagtcagttatgttgaaggaattccta 8573783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 378
Target Start/End: Complemental strand, 10335485 - 10335412
Alignment:
Q  305 tgaattcttatcataggacaattattctctaattattttgaagtctctacctttgtttatgtatgtgtatttga 378  Q
    ||||||||||||||||||  |  |||||||||||| | || ||||  ||||||||||||||||| |||||||||    
T  10335485 tgaattcttatcataggatgaggattctctaattactctggagtcgttacctttgtttatgtatatgtatttga 10335412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 10347707 - 10347650
Alignment:
Q  51 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcct 108  Q
    ||||||||||||||||||| | |||||||||    |||||||||||||||||||||||    
T  10347707 gaagctgttttggtatgatttgaagagtgaacaaattagttatgttgaaggaattcct 10347650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 305 - 392
Target Start/End: Complemental strand, 9274241 - 9274161
Alignment:
Q  305 tgaattcttatcataggacaattattctctaattattttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgc 392  Q
    ||||||||||| |||||||||  |||| ||||||| ||||||   ||||||||||||||||||    ||| |||||||||||||||||    
T  9274241 tgaattcttattataggacaaggattcactaattactttgaa---tctacctttgtttatgta----tatgtgacaatgtgtgtatgc 9274161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 8579703 - 8579762
Alignment:
Q  50 agaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 109  Q
    ||||||||||||||||||||||||| ||||||   |||| || |||| ||||||||||||    
T  8579703 agaagctgttttggtatgatctcaaaagtgaagaagttacttgtgttcaaggaattccta 8579762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 368
Target Start/End: Complemental strand, 9328255 - 9328216
Alignment:
Q  329 ttctctaattattttgaagtctctacctttgtttatgtat 368  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  9328255 ttctctaattactttgaagtctctacctttgtttacgtat 9328216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 9065789 - 9065871
Alignment:
Q  27 ggttctgttgcaagtagatcgtgagaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 109  Q
    |||| ||||| | ||||||| | ||||||| |||||||||||| | |||||||||   |||| ||||||||||||| ||||||    
T  9065789 ggttttgttggaggtagatcatcagaagctcttttggtatgatttgaagagtgaacaagttatttatgttgaaggagttccta 9065871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 327 - 393
Target Start/End: Complemental strand, 10347430 - 10347365
Alignment:
Q  327 tattctctaattattttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgct 393  Q
    |||| |||||||| |||||||||| |||||| |||||||| | ||||||||||||||| | ||||||    
T  10347430 tattttctaattactttgaagtctttacctt-gtttatgtttatgtatttgacaatgtctatatgct 10347365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 419
Target Start/End: Complemental strand, 9274127 - 9274094
Alignment:
Q  386 tgtatgctatgtgttggtttatgagttgaccttg 419  Q
    ||||||||||||||||||||| ||||||||||||    
T  9274127 tgtatgctatgtgttggtttaagagttgaccttg 9274094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 10352675 - 10352630
Alignment:
Q  386 tgtatgctatgtgttggtttatgagttgaccttgtgaatagctaaa 431  Q
    |||||||||||||||| |||| ||||||||||||||| | ||||||    
T  10352675 tgtatgctatgtgttgttttaggagttgaccttgtgagttgctaaa 10352630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 242 - 394
Target Start/End: Complemental strand, 37462205 - 37462064
Alignment:
Q  242 ttcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctctaattatt 341  Q
    |||| ||||||||||||||||||||| |||||||  || ||| |||||||||||||||||||||       | | |||||||||  |||||||||||| |    
T  37462205 ttcattggacccatcatatgatatatgtagttaagttctatgctaaaaggtcaaattgaattct-------tgttataggacaaggattctctaattact 37462113  T
Q  342 ttgaagtctctacctttgtttatgtatgtgtatttgacaatgtgtgtatgcta 394  Q
    ||||||||||||||||||||||||||    ||| |||||||||||||||||||    
T  37462112 ttgaagtctctacctttgtttatgta----tatgtgacaatgtgtgtatgcta 37462064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 213 - 368
Target Start/End: Complemental strand, 4208 - 4061
Alignment:
Q  213 agttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaactccatgttaaaaggtcaaattgaattctgaattct 312  Q
    ||||||| || ||||||||||||||||  |||||||||||||||||||||| ||| |||||||||||  || |||||  ||||||       ||||||||    
T  4208 agtttttgctgtgtataagttaatatctgttcaatggacccatcatatgatttatttagttaaactctgtgctaaaa-ctcaaat-------tgaattct 4117  T
Q  313 tatcataggacaattattctctaattattttgaagtctctacctttgtttatgtat 368  Q
    ||| |||||| ||  ||||| |||||| |||||| |||||||||||||||||||||    
T  4116 tattataggaaaaggattctataattactttgaattctctacctttgtttatgtat 4061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 178 - 367
Target Start/End: Original strand, 41967067 - 41967247
Alignment:
Q  178 acaagcaagagaaggtacttcttattgattacctgagttttttctttgtataagttaatatcaattcaatggacccatcatatgatatatctagttaaac 277  Q
    ||||||||||||||||||||||| || |||| || || |||| ||||||||| ||| | || | | ||||||||||||||||  ||| || || ||||||    
T  41967067 acaagcaagagaaggtacttcttgttcattatcttagcttttgctttgtatatgtt-agattagtgcaatggacccatcatacaatacatgtacttaaac 41967165  T
Q  278 tccatgttaaaaggtcaaattgaattctgaattcttatcataggacaattattctctaattattttgaagtctctacctttgtttatgta 367  Q
    || ||||| |||||| ||||       ||||||||||| |||||| || ||||||||||||| || |||| || ||||||||||||||||    
T  41967166 tctatgtt-aaaggttaaat-------tgaattcttattataggataactattctctaattacttcgaaggctttacctttgtttatgta 41967247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 41966911 - 41967017
Alignment:
Q  55 ctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattcctagggtggatcatgccatcatttgtgttggaagtcttgtacaacctt 154  Q
    ||||||||||||||| | |||||||||    ||| ||||||||||||||||||||   | ||| | |||||  ||||||||||||||||||||| |||||    
T  41966911 ctgttttggtatgatttgaagagtgaacaaattacttatgttgaaggaattcctaattttgatgaagccatgttttgtgttggaagtcttgtaccacctt 41967010  T
Q  155 ctttccc 161  Q
    | |||||    
T  41967011 ccttccc 41967017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 26574575 - 26574512
Alignment:
Q  305 tgaattcttatcataggacaattattctctaattattttgaagtctctacctttgtttatgtat 368  Q
    |||||||||||||||||| ||  |||||||||||| ||||| |||| |||| ||||||||||||    
T  26574575 tgaattcttatcataggataaggattctctaattactttgacgtctttaccgttgtttatgtat 26574512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 45230351 - 45230293
Alignment:
Q  51 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 109  Q
    ||||||||||||||||||| |||||||||||   |||| | ||||| ||||||||||||    
T  45230351 gaagctgttttggtatgatttcaagagtgaacaagttactcatgttcaaggaattccta 45230293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 45243613 - 45243555
Alignment:
Q  51 gaagctgttttggtatgatctcaagagtgaatgtgttagttatgttgaaggaattccta 109  Q
    |||||||||||||||||||||||| ||||||    ||| ||||||| ||||||||||||    
T  45243613 gaagctgttttggtatgatctcaacagtgaacaacttacttatgttcaaggaattccta 45243555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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