View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_low_11 (Length: 462)
Name: NF1571_low_11
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 51932898 - 51933351
Alignment:
| Q |
1 |
cctcttcttccacaacaagttggtaatcattaattagcttttgcattttcttcttcttttcctcggtgtctacaacctcttgaacttgaggtttcttatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51932898 |
cctcttcttccacaacaagttggtaatcattaattagcttttgcattttcttcttcttttcctcggtgtctacaacctcttgaacttgaggtttcttatc |
51932997 |
T |
|
| Q |
101 |
cataacctgtctaatttttcttctccattcttgtctctcttcaagagtcataacataagggtcattttcttttggtgtgtcatcttcatagtcgctatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51932998 |
cataacctgtctaatttttcttctccattcttgtctctcttcaagagtcataacataagggtcattttcttttggtgtgtcatcttcatagtcgctatca |
51933097 |
T |
|
| Q |
201 |
tcactgtcactgtatgattctttacctcttttcttccaaccagcaccatcagatttgagtgcttgaactcttgttgagaagatggggtttgagaaaaggg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51933098 |
tcactgtcactgtatgattctttacctcttttcttccaaccagcaccatcagatttgagtgcttgaactcttgttgagaagatggggtttgagaaaaggg |
51933197 |
T |
|
| Q |
301 |
tcctcgaattgaagagtttgttggtgggtttctggttgtaaagagaaaatgaattggggggtagattgaagtttatatgtttgattgctgaaattaaaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51933198 |
tcctcgaattgaagagtttgttggtgggtttctggttgtaaagagaaaatgaattggggggtagattgaagtttatatgtttgattgctgaaattaaaga |
51933297 |
T |
|
| Q |
401 |
tggtgacagtggcaaagtgagtgccatggtcggaggctaacctagttctgtgct |
454 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51933298 |
tggtgacagtggcaaagtgagtgccatggtcggaggctaacctagttctgtgct |
51933351 |
T |
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