View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1571_low_14 (Length: 434)

Name: NF1571_low_14
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1571_low_14
NF1571_low_14
[»] chr5 (8 HSPs)
chr5 (16-418)||(35811075-35811480)
chr5 (80-415)||(788117-788447)
chr5 (21-333)||(32278487-32278796)
chr5 (80-418)||(19215327-19215665)
chr5 (239-364)||(36868291-36868416)
chr5 (70-288)||(37307027-37307246)
chr5 (270-316)||(36150672-36150718)
chr5 (332-376)||(37307256-37307300)
[»] chr4 (6 HSPs)
chr4 (133-415)||(37049948-37050234)
chr4 (132-396)||(24239730-24239993)
chr4 (69-313)||(18522123-18522369)
chr4 (187-373)||(16832084-16832270)
chr4 (134-209)||(7492180-7492257)
chr4 (271-394)||(19852453-19852576)
[»] chr6 (4 HSPs)
chr6 (133-411)||(25167795-25168076)
chr6 (69-373)||(3949324-3949631)
chr6 (240-376)||(10990011-10990147)
chr6 (76-152)||(5605501-5605577)
[»] chr2 (6 HSPs)
chr2 (148-413)||(37344569-37344836)
chr2 (76-396)||(14296093-14296411)
chr2 (134-415)||(31092264-31092547)
chr2 (242-396)||(18811704-18811858)
chr2 (237-396)||(18693071-18693227)
chr2 (270-354)||(8413844-8413928)
[»] chr1 (10 HSPs)
chr1 (76-415)||(13061794-13062134)
chr1 (70-346)||(14344072-14344348)
chr1 (263-396)||(17114734-17114867)
chr1 (242-396)||(41035024-41035178)
chr1 (237-396)||(49491874-49492032)
chr1 (263-376)||(50903502-50903615)
chr1 (272-376)||(19394156-19394260)
chr1 (237-357)||(3374309-3374429)
chr1 (133-229)||(44163649-44163747)
chr1 (270-316)||(34566274-34566320)
[»] chr3 (7 HSPs)
chr3 (76-413)||(29346742-29347086)
chr3 (80-415)||(35526397-35526737)
chr3 (242-396)||(51524834-51524988)
chr3 (239-376)||(16893064-16893201)
chr3 (69-210)||(49106861-49107005)
chr3 (273-394)||(31067144-31067266)
chr3 (345-386)||(26796922-26796963)
[»] chr8 (5 HSPs)
chr8 (134-415)||(29369051-29369334)
chr8 (239-396)||(27786783-27786940)
chr8 (262-392)||(36206439-36206569)
chr8 (238-394)||(28225708-28225864)
chr8 (271-394)||(8831250-8831373)
[»] chr7 (7 HSPs)
chr7 (238-376)||(26449531-26449669)
chr7 (148-288)||(34547955-34548097)
chr7 (76-214)||(7543938-7544075)
chr7 (21-252)||(16099675-16099904)
chr7 (266-412)||(19407866-19408021)
chr7 (76-158)||(29132280-29132362)
chr7 (272-376)||(33191265-33191369)
[»] scaffold0531 (1 HSPs)
scaffold0531 (240-394)||(10228-10382)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 35811480 - 35811075
Alignment:
Q  16 accttaaccaatacatcagactcacataatgtaaaac----ctatgnnnnnnncaatccggatttatcccaagaaacgaaaggtcctaaggaaagagatg 111  Q
    |||||||||||||||||||| ||||| ||||||||||    |||||       ||||||| ||||||| |||||||||||| ||||||||||||||| |     
T  35811480 accttaaccaatacatcagagtcacacaatgtaaaacgtacctatgaaaaaaacaatccgaatttatcacaagaaacgaaatgtcctaaggaaagaggta 35811381  T
Q  112 tcaaaaacaaacattgtaaagaaaaactagtcaaattatgacaattcttggtcaaacaacgactaaaagactaccctctatgaaaatttgaacaaaagta 211  Q
    |||||||||| ||| ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35811380 tcaaaaacaagcatcgtaaagaaaaactagtcaaattatgattattcttggtcaaacaacggctaaaagactaccctctatgaaaatttgaacaaaagta 35811281  T
Q  212 ttggtattcccggatattttgttgtaattgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagct 311  Q
    |||||||||||  ||||| ||||| |||||||||||||||||| ||||| ||||||| |||||||   |||| |||| ||||||||||||||||||| ||    
T  35811280 ttggtattcccaaatattatgttgcaattgaaccaactattttatatttgtcaaggc-gctttggtaataccattttggacacgagtcctcattccaact 35811182  T
Q  312 gagttaaagttagaatgctttactttattcacctgcttcttcttctatctctctgccttagtgctatcaaatagatttggatagtcttccatctcaagcc 411  Q
    || ||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||||||||||| ||    
T  35811181 gaattaaagttagaacactttactttattcacctgcttcttcttctatctctctgtcttagtgttatcaaataaatttggataatcttccatctcaaacc 35811082  T
Q  412 tcttatc 418  Q
    |||||||    
T  35811081 tcttatc 35811075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 80 - 415
Target Start/End: Original strand, 788117 - 788447
Alignment:
Q  80 ccaagaaacgaaaggtcctaaggaaagagatgtcaaaaacaaacattgtaaagaaaaactagtcaaattatgacaattcttggtcaaacaacgactaaaa 179  Q
    |||||||| |||||  | ||||||||||| ||||||| |||| |||||||||   ||||||| ||||||||||| |||| ||| ||||| ||  ||||||    
T  788117 ccaagaaaggaaagaccttaaggaaagaggtgtcaaagacaaccattgtaaa---aaactagacaaattatgaccattcatggccaaaccacagctaaaa 788213  T
Q  180 gactaccctctatgaaaatttgaacaaaagtattggtattcccggatattttgttgtaattgaaccaactattttgtatttttcaaggcggctttggagg 279  Q
    ||||||||||| ||||| ||||||||||||| ||||||||| | |||||| ||||| ||||||||||| |||| | ||| | ||||||||||||||||||    
T  788214 gactaccctctctgaaa-tttgaacaaaagt-ttggtattctccgatattctgttgcaattgaaccaattattctatatatgtcaaggcggctttggagg 788311  T
Q  280 tacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttcttcttctatctctctgccttagtgctatc 379  Q
     |||||||| | |||||||||||||  |  ||||||||||||||||| |||| | ||| |||| |||||||||||||| ||||||||||||| |||| ||    
T  788312 aacccttttgggcacgagtcctcatagcgtctgagttaaagttagaaggcttcattttgttcatctgcttcttcttctttctctctgccttaatgctctc 788411  T
Q  380 aaatagatttggatagtcttccatctcaagcctctt 415  Q
    ||||||| ||||||||||||| || |||||||||||    
T  788412 aaatagacttggatagtcttctatttcaagcctctt 788447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 21 - 333
Target Start/End: Original strand, 32278487 - 32278796
Alignment:
Q  21 aaccaatacatcagactcacataatgtaaaacctatgnnnnnnncaatccggatttatcccaagaaacgaaaggtcctaaggaaagagatgtcaaaaaca 120  Q
    ||||||||||||||| ||||||| |||||||||||||        || |||||| |||||||||||| | || ||||||||||| ||| ||||||| |||    
T  32278487 aaccaatacatcagagtcacatagtgtaaaacctatgaaaagagaaa-ccggatctatcccaagaaaaggaatgtcctaaggaacgaggtgtcaaagaca 32278585  T
Q  121 aacattgtaaagaaaaactagtc-aaattatgacaattcttggtcaaacaacgactaaaagacta--ccctctatgaaaatttgaacaaaagtattggta 217  Q
    | || || | ||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||  | ||||| ||||||| || ||     |||||||    
T  32278586 accaatgaacagaaaaactagtcaaaagtatgaccattcttggccaaacaacgactaaaagactactctctctaagaaaattagagca-----attggta 32278680  T
Q  218 ttcccggatattttgttgtaattgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagtta 317  Q
    ||| |  ||||||||||| ||||||||| |||||| ||||| | ||||||||||||||||||||||||||| |  |||| || ||||||| |||||||||    
T  32278681 ttctcatatattttgttgcaattgaacccactattctgtatctgtcaaggcggctttggaggtacccttttgggaacgaatcttcattccggctgagtta 32278780  T
Q  318 aagttagaatgcttta 333  Q
    ||  ||||| ||||||    
T  32278781 aaactagaaggcttta 32278796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 80 - 418
Target Start/End: Complemental strand, 19215665 - 19215327
Alignment:
Q  80 ccaagaaacgaaaggtcctaaggaaagagatgtcaaaaacaaacattgtaaagaaaaactagtcaaattatgacaattcttggtcaaacaacgactaaaa 179  Q
    |||||||| |||||| ||||| |||| || ||||||| |||| |||| || |||||| |||||||||||||| |  ||||||| ||||||||  ||||||    
T  19215665 ccaagaaaggaaaggacctaatgaaataggtgtcaaagacaaccattatacagaaaa-ctagtcaaattatgtctgttcttggccaaacaacagctaaaa 19215567  T
Q  180 gactaccctctatg--aaaatttgaacaaaagtattggtattcccggatattttgttgtaattgaaccaactattttgtatttttcaaggcggctttgga 277  Q
    |||| |||||| ||  |||||||||| | ||||||||  |||||  || ||| | | | ||||  |||||||||| ||||| |  |||||| | |||| |    
T  19215566 gactgccctctctgtgaaaatttgaatagaagtattgacattcctagaaattctat-gcaattcgaccaactattctgtatctgccaaggcagttttgaa 19215468  T
Q  278 ggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttcttcttctatctctctgccttagtgcta 377  Q
    ||||||||||| | | || ||||||||||  |||||||||||| ||||  || | ||||| ||||||||||||||||||  |||||||| |||||||||     
T  19215467 ggtacccttttgggctcgggtcctcattcgggctgagttaaagctagacggcatcactttgttcacctgcttcttcttcattctctctgtcttagtgctc 19215368  T
Q  378 tcaaatagatttggatagtcttccatctcaagcctcttatc 418  Q
    ||||||||  ||||||||||||||||||| |||||||||||    
T  19215367 tcaaataggcttggatagtcttccatctctagcctcttatc 19215327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 239 - 364
Target Start/End: Complemental strand, 36868416 - 36868291
Alignment:
Q  239 ttgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttacttta 338  Q
    |||||||||||||| ||||| | ||||||  |||||||||| |||||||| |||||| | ||||||||| |||||||||||| ||||| |||| ||||||    
T  36868416 ttgaaccaactattatgtatctgtcaaggtagctttggaggaacccttttggacacgggccctcattccggctgagttaaagctagaaggcttcacttta 36868317  T
Q  339 ttcacctgcttcttcttctatctctc 364  Q
    ||||| ||||||||||||| ||||||    
T  36868316 ttcacttgcttcttcttctttctctc 36868291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 70 - 288
Target Start/End: Original strand, 37307027 - 37307246
Alignment:
Q  70 cggatttatcccaagaaacgaaaggtcctaaggaaagagatgtcaaaaacaaacattgtaaagaaaaactagtcaaattatgacaattcttggtcaaaca 169  Q
    ||||| |||||||||||  |||| ||| ||||||||||| ||||||| || | ||||||| | |||| ||||||| || ||||  ||| |||| ||||||    
T  37307027 cggatctatcccaagaag-gaaatgtcataaggaaagaggtgtcaaagaccatcattgtacataaaacctagtcatataatgagcatttttggccaaaca 37307125  T
Q  170 acgactaaaagactaccctctatg--aaaatttgaacaaaagtattggtattcccggatattttgttgtaattgaaccaactattttgtatttttcaagg 267  Q
    ||  ||| |||||||| |||| ||  ||||||||||||||||||||| |||| || | |||| | |||||||||||||||||||| ||||| |  ||||     
T  37307126 actgctacaagactacactctctgtgaaaatttgaacaaaagtattgatatttccagttattcttttgtaattgaaccaactattatgtatctgccaaga 37307225  T
Q  268 cggctttggaggtaccctttt 288  Q
    | |||||  ||||||||||||    
T  37307226 cagctttaaaggtaccctttt 37307246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 36150672 - 36150718
Alignment:
Q  270 gctttggaggtacccttttagacacgagtcctcattccagctgagtt 316  Q
    |||||||||||| |||||| | |||||||||||||||| ||||||||    
T  36150672 gctttggaggtatccttttgggcacgagtcctcattccggctgagtt 36150718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 37307256 - 37307300
Alignment:
Q  332 tactttattcacctgcttcttcttctatctctctgccttagtgct 376  Q
    |||||| ||||| ||||||||||||| ||||||| ||||||||||    
T  37307256 tactttgttcacatgcttcttcttctttctctctaccttagtgct 37307300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 133 - 415
Target Start/End: Complemental strand, 37050234 - 37049948
Alignment:
Q  133 aaaaactagtcaaat-tatgacaattcttggtcaaacaacgactaaaagactaccctct--atgaaaatttgaacaaaagtattggtattcccggatatt 229  Q
    ||||||||||||||  |||||| || ||||| |||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||  |||||    
T  37050234 aaaaactagtcaaaagtatgaccatacttggccaaacaacgactaaaagactactctctctatgaaaatttgaacaaaagtattggtattcccatatatt 37050135  T
Q  230 ttgttgtaattgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttag-aatg 328  Q
     ||||| |||||||||||||||||||||| | |||| |||||||||||||||||||||| | |||||||||||||||| |||||||||||  ||| || |    
T  37050134 ctgttgcaattgaaccaactattttgtatctctcaaagcggctttggaggtacccttttgggcacgagtcctcattccggctgagttaaaactagaaagg 37050035  T
Q  329 ctttactttattcacctgcttcttcttctatctctctgccttagtgctatcaaatagatttggatagtcttccatctcaagcctctt 415  Q
    ||| ||||| ||||| || |||||||||| | |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||    
T  37050034 cttcactttgttcacatgtttcttcttctttttctctgccttagtgctttcagatagacttggatagtcttccatctcaagcctctt 37049948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 132 - 396
Target Start/End: Original strand, 24239730 - 24239993
Alignment:
Q  132 gaaaaactagtcaaattatgacaattcttggtcaaacaacgactaaaagactaccct--ctatgaaaatttgaacaaaagtattggtattcccggatatt 229  Q
    ||||||||||||| ||||||||||||||||| |||||||| | || ||||||||| |  |||||||||||||||||||||||||| ||||||| | ||||    
T  24239730 gaaaaactagtcatattatgacaattcttggccaaacaactattacaagactaccatttctatgaaaatttgaacaaaagtattgatattccctgttatt 24239829  T
Q  230 ttgttgtaattgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgc 329  Q
     | |||||||||| ||||||||| ||||| |  ||||   ||||| ||||||||||||| | |||| ||||||||||| |||||||||||| ||| | ||    
T  24239830 cttttgtaattgagccaactattatgtatctgccaagatagcttttgaggtacccttttgggcacgggtcctcattccggctgagttaaagctagtaggc 24239929  T
Q  330 tttactttattcacctgcttcttcttctatctctctgccttagtgctatcaaatagatttggatagt 396  Q
    || ||||||||||||| |||||||||   ||||  |||||||||||| ||| ||||| |||||||||    
T  24239930 ttcactttattcacctacttcttctt---tctcgatgccttagtgctctcagatagacttggatagt 24239993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 69 - 313
Target Start/End: Original strand, 18522123 - 18522369
Alignment:
Q  69 ccggatttatcccaagaaacgaaaggtcctaaggaaagagatgtcaaaaacaaacattgtaaagaaaaactagtcaaattatgacaattcttggtcaaac 168  Q
    |||||| |||||||| ||| |||||||||||||||||||| | ||||| |||| || || | | ||||||||| ||||||||||| |||||||| |||||    
T  18522123 ccggatctatcccaaaaaatgaaaggtcctaaggaaagaggtttcaaagacaaccaatggacataaaaactagacaaattatgaccattcttggccaaac 18522222  T
Q  169 aacgactaaaagac--taccctctatgaaaatttgaacaaaagtattggtattcccggatattttgttgtaattgaaccaactattttgtatttttcaag 266  Q
    ||   |||| ||||  ||| |||||||||||||||||||||||||||  |||||||| ||||| || || || ||||||||||||| | ||| |  ||||    
T  18522223 aaaagctaatagactatactctctatgaaaatttgaacaaaagtattcatattcccgaatattctgctgcaactgaaccaactattctatatctgccaag 18522322  T
Q  267 gcggctttggaggtacccttttagacacgagtcctcattccagctga 313  Q
     || ||||||||| | ||||||   ||||  |||||||||| |||||    
T  18522323 tcgactttggaggcatccttttgagcacggatcctcattccggctga 18522369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 187 - 373
Target Start/End: Original strand, 16832084 - 16832270
Alignment:
Q  187 ctctatgaaaatttgaacaaaagtattggtattcccggatattttgttgtaattgaaccaactattttgtatttttcaaggcggctttggaggtaccctt 286  Q
    ||||||||||||||||  |||||||||| ||||||  | |||| || || || |||||| |||||| ||||| |  |||| | |||||||||| ||||||    
T  16832084 ctctatgaaaatttgagtaaaagtattgatattcctagctattctgatgcaaatgaaccgactattatgtatctgccaagacagctttggaggcaccctt 16832183  T
Q  287 ttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttcttcttctatctctctgccttagt 373  Q
    ||  ||||| |||||||||||| ||||||||||||||| | |||| ||||| ||||| |||||||| |||  |||||||||||||||    
T  16832184 ttgaacacgtgtcctcattccaactgagttaaagttagtaggcttcactttgttcacatgcttcttattccttctctctgccttagt 16832270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 7492257 - 7492180
Alignment:
Q  134 aaaactagtcaaattatgacaattcttggtcaaacaacgactaaaagactaccc--tctatgaaaatttgaacaaaag 209  Q
    ||||||||||||||||| || || |||   ||||||||  ||||||||||||||  ||||||||||||||||||||||    
T  7492257 aaaactagtcaaattataaccatacttaagcaaacaacagctaaaagactaccctttctatgaaaatttgaacaaaag 7492180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 394
Target Start/End: Complemental strand, 19852576 - 19852453
Alignment:
Q  271 ctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttcttcttctatctctctgcctt 370  Q
    |||||||| ||| ||||| | |||| || |||||||| | |||||||||  ||| | || | ||||| | ||| ||||||||||||| | ||||||||||    
T  19852576 ctttggagttactcttttgggcacgggttctcattccgggtgagttaaaactagcaggcctcactttgtgcacgtgcttcttcttctttttctctgcctt 19852477  T
Q  371 agtgctatcaaatagatttggata 394  Q
    |||||| ||  ||||| |||||||    
T  19852476 agtgctctccgatagacttggata 19852453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 151; Significance: 9e-80; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 133 - 411
Target Start/End: Complemental strand, 25168076 - 25167795
Alignment:
Q  133 aaaaactagtcaaat-tatgacaattcttggtcaaacaacgactaaaagactaccct--ctatgaaaatttgaacaaaagtattggtattcccggatatt 229  Q
    ||||||||||||||  |||||| || ||||| |||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||  |||||    
T  25168076 aaaaactagtcaaaagtatgaccatacttggccaaacaacgactaaaagactactctttctatgaaaatttgaacaaaagtattggtattcccatatatt 25167977  T
Q  230 ttgttgtaattgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgc 329  Q
     ||||| |||||||||||||||| ||||| | ||||||||||||||||||||||||||| | || |||||||| |||| |||||||||||  ||||| ||    
T  25167976 ctgttgcaattgaaccaactattctgtatctgtcaaggcggctttggaggtacccttttgggcatgagtcctctttccggctgagttaaaactagaaggc 25167877  T
Q  330 tttactttattcacctgcttcttcttctatctctctgccttagtgctatcaaatagatttggatagtcttccatctcaagcc 411  Q
    || ||||| ||||| || |||||||||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  25167876 ttcactttgttcacatgtttcttcttctttctctctgccttagtgctttcagatagacttggatagtcttccatctcaagcc 25167795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 69 - 373
Target Start/End: Complemental strand, 3949631 - 3949324
Alignment:
Q  69 ccggatttatcccaagaaacgaaaggtcctaaggaaagagatgtcaaaaacaaacattgtaaagaaaaactagtcaaat-tatgacaattcttggtcaaa 167  Q
    |||||| ||||| |||||| | || | ||||||||| ||| ||||||| ||||  | |  | |||||| |||||||||  |||||| |||||||| ||||    
T  3949631 ccggatctatcctaagaaagggaatgacctaaggaacgaggtgtcaaagacaactaataaacagaaaagctagtcaaaagtatgaccattcttggccaaa 3949532  T
Q  168 caacgactaaaagactac--cctctatgaaaatttgaacaaaagtattggtattcccggatattttgttgtaattgaaccaactattttgtatttttcaa 265  Q
     ||||||| |||||||||  |||||| |||||||||||||||||||||||||||| | |||||| ||||| ||||||| |||||||| || || | ||||    
T  3949531 taacgactgaaagactactccctctaagaaaatttgaacaaaagtattggtattctcagatattctgttgcaattgaatcaactattctgcatctgtcaa 3949432  T
Q  266 ggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttcttcttctatctctct 365  Q
    ||||||||||||||||||||| |  ||||||||||||||||  ||| |||||||  || || |||| |||||||||||||| |||||||||| || ||||    
T  3949431 ggcggctttggaggtacccttctgaacacgagtcctcattctggctcagttaaaactaaaaagcttcactttattcacctgtttcttcttctttccctct 3949332  T
Q  366 gccttagt 373  Q
    ||||||||    
T  3949331 gccttagt 3949324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 376
Target Start/End: Complemental strand, 10990147 - 10990011
Alignment:
Q  240 tgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttat 339  Q
    ||||||||||||||||||| | | | ||| |||||||||| ||||||||   |||||||||||||| | ||| |||||||| ||||| | || ||||| |    
T  10990147 tgaaccaactattttgtatctgttagggcagctttggaggaacccttttgtgcacgagtcctcatttcggctaagttaaagctagaaggattcactttgt 10990048  T
Q  340 tcacctgcttcttcttctatctctctgccttagtgct 376  Q
    || | |||| |||||||| |||| |||||||||||||    
T  10990047 tctcttgctgcttcttctttctcgctgccttagtgct 10990011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 5605501 - 5605577
Alignment:
Q  76 tatcccaagaaacgaaaggtcctaaggaaagagatgtcaaaaacaaacattgtaaagaaaaactagtcaaattatga 152  Q
    ||||| |||||| |||||| ||||| ||||||| ||||||| || |  |||||| |||| ||||| |||||||||||    
T  5605501 tatccaaagaaaggaaaggccctaaagaaagaggtgtcaaagaccactattgtacagaagaactactcaaattatga 5605577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 148 - 413
Target Start/End: Complemental strand, 37344836 - 37344569
Alignment:
Q  148 tatgacaattcttggtcaaacaacgactaaaagactaccctctat--gaaaatttgaacaaaagtattggtattcccggatattttgttgtaattgaacc 245  Q
    |||||| |||||||| ||||||||||||| |||||||| ||||||  |||||||||||||||| ||||||||||||| |||||| || || || |||| |    
T  37344836 tatgaccattcttggccaaacaacgactagaagactactctctataagaaaatttgaacaaaaatattggtattcccagatattatgctgcaaatgaatc 37344737  T
Q  246 aactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacct 345  Q
    ||||||| ||||| | ||||||||||||||||| ||||||||| | ||||| |||||||||| |||||||||||  ||||||| || ||||| |||||||    
T  37344736 aactattatgtatatgtcaaggcggctttggagatacccttttgggcacgaatcctcattccggctgagttaaaactagaatgattcactttgttcacct 37344637  T
Q  346 gcttcttcttctatctctctgccttagtgctatcaaatagatttggatagtcttccatctcaagcctc 413  Q
    | |||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  37344636 gtttcttcttctttctctctgccttagtgctttcaaatagacttggatagtcttccatctcaagcctc 37344569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 76 - 396
Target Start/End: Original strand, 14296093 - 14296411
Alignment:
Q  76 tatcccaagaaacgaaaggtcctaaggaaagagatgtcaaaaacaaacattgtaaagaaaaactagtcaaattatgacaattcttggtcaaacaacgact 175  Q
    |||||||||||  |||||||| ||||||||||| ||||||| || | ||||| |  |||||||||| ||||| ||||| |||||||  ||| ||||  ||    
T  14296093 tatcccaagaag-gaaaggtcttaaggaaagaggtgtcaaagaccaccattgcagggaaaaactagacaaataatgaccattcttgc-caatcaactgct 14296190  T
Q  176 aaaagactaccctctatgaaaatttgaacaaaagtattggtattcccggatattttgttgtaattgaaccaactattttgtatttttcaaggcggctttg 275  Q
    | |||||||||||||| |||||||||||||||||||||  |||||||   |||| | ||| |||||||||||||||| ||||| |  ||||||  |||||    
T  14296191 acaagactaccctctacgaaaatttgaacaaaagtatttatattcccacttattctattgcaattgaaccaactattatgtatctgccaaggcatctttg 14296290  T
Q  276 gaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttcttcttctatctctctgccttagtgc 375  Q
    ||||||||||||| ||||||||| |||||||| |||||||||||| ||| | |||| | ||| |||| |||||||||||||| ||||||| ||||||| |    
T  14296291 gaggtacccttttggacacgagtgctcattccggctgagttaaagctagtaggcttcattttgttcatctgcttcttcttctttctctctaccttagtac 14296390  T
Q  376 tatcaaatagatttggatagt 396  Q
    | ||| ||||| |||||||||    
T  14296391 tctcagatagacttggatagt 14296411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 134 - 415
Target Start/End: Complemental strand, 31092547 - 31092264
Alignment:
Q  134 aaaactagtcaaattatgacaattcttggtcaaacaacgactaaaagactaccctct--atgaaaatttgaacaaaagtattggtattcccggatatttt 231  Q
    ||||||||||||||||| || ||  ||   ||||||||  |||||||||||||||||  ||||||||||||||||||| ||||   |||||||||||| |    
T  31092547 aaaactagtcaaattataaccatatttaaccaaacaacagctaaaagactaccctctctatgaaaatttgaacaaaagcattgacgttcccggatattct 31092448  T
Q  232 gttgtaattgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctt 331  Q
      || || || |||||||||| ||||| |  |||| || |||||||||||||||||| | |||||||||||||||| |||||||||||  ||||| || |    
T  31092447 aatgcaaatggaccaactattctgtatctggcaagacgactttggaggtacccttttgggcacgagtcctcattccggctgagttaaatctagaaggcat 31092348  T
Q  332 tactttattcacctgcttcttcttctatctctctgccttagtgctatcaaatagatttggatagtcttccatctcaagcctctt 415  Q
     ||||||||||| || |||||||||| |||||||| ||||||||| ||| ||||| ||||||||||||||| ||||||||||||    
T  31092347 cactttattcacgtgattcttcttctttctctctgtcttagtgctctcagatagacttggatagtcttccagctcaagcctctt 31092264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 242 - 396
Target Start/End: Original strand, 18811704 - 18811858
Alignment:
Q  242 aaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattc 341  Q
    ||||||||||| ||||| | ||||||  ||||||||||  ||||||| | |||| ||||||||||| |||||||||||| || || |||| ||||||| |    
T  18811704 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaagcttcactttatgc 18811803  T
Q  342 acctgcttcttcttctatctctctgccttagtgctatcaaatagatttggatagt 396  Q
    |||||||||||||||| ||||||||||||| |||| ||||||| | |||||||||    
T  18811804 acctgcttcttcttctttctctctgccttattgctctcaaataaacttggatagt 18811858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 396
Target Start/End: Complemental strand, 18693227 - 18693071
Alignment:
Q  237 aattgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactt 336  Q
    |||||||||||||||||||||| | ||||| |  ||||||||| |||||||||| |||  ||||||||||| ||| |||||||| ||| |  ||| ||||    
T  18693227 aattgaaccaactattttgtatctgtcaagacaactttggaggaacccttttaggcacaggtcctcattccggcttagttaaagctagcagacttcactt 18693128  T
Q  337 tattcacctgcttcttcttctatctctctgccttagtgctatcaaatagatttggatagt 396  Q
    | ||  |  ||||||||||   | |||||||||||||||| ||| | || ||||||||||    
T  18693127 tgtttgcacgcttcttctt---tttctctgccttagtgctctcataaaggtttggatagt 18693071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 8413844 - 8413928
Alignment:
Q  270 gctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttcttct 354  Q
    |||||||||||||||||||   |||| ||||||||||| | |||||| ||| ||| | |||| ||||| ||| ||||||||||||    
T  8413844 gctttggaggtacccttttgagcacgggtcctcattccggttgagttgaagctagtaggcttcactttgttcgcctgcttcttct 8413928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 76 - 415
Target Start/End: Original strand, 13061794 - 13062134
Alignment:
Q  76 tatcccaagaaacgaaaggtcctaaggaaagagatgtcaaaaacaaacattgtaaagaaaaactagtcaaattatgacaattcttggtcaaacaacgact 175  Q
    |||||||||||| |||| | ||||| ||||||| ||||||| |||| ||||| | |||||| ||||||||| || ||| ||||| || ||||||||  ||    
T  13061794 tatcccaagaaatgaaaaggcctaatgaaagaggtgtcaaatacaaccattgaacagaaaa-ctagtcaaactacgaccattctaggccaaacaacagct 13061892  T
Q  176 aaaagactaccctct--atgaaaatttgaacaaaagtattggtattcccggatattttgttgtaattgaaccaactattttgtatttttcaaggcggctt 273  Q
    |||||||||||||||  |||||||||||||||||||||||   ||||||   |||  | ||| ||||| ||||| |||| ||||||| ||||||||||||    
T  13061893 aaaagactaccctctctatgaaaatttgaacaaaagtattaacattcccatctatacttttgcaattggaccaattattctgtatttgtcaaggcggctt 13061992  T
Q  274 tggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttcttcttctatctctctgccttagt 373  Q
    ||||||||| |||||   |||| ||||||||| | |||||||||||| || || || | ||||| ||||||||||||||||||| | |||||| ||||||    
T  13061993 tggaggtactcttttcagcacgggtcctcatttcggctgagttaaagctaaaaggcatcactttgttcacctgcttcttcttctttttctctgtcttagt 13062092  T
Q  374 gctatcaaatagatttggatagtcttccatctcaagcctctt 415  Q
    ||| ||| ||||| ||||| |||||||||||||||| |||||    
T  13062093 gctctcagatagacttggaaagtcttccatctcaagtctctt 13062134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 70 - 346
Target Start/End: Complemental strand, 14344348 - 14344072
Alignment:
Q  70 cggatttatcccaagaaacgaaaggtcctaaggaaagagatgtcaaaaacaaacattgtaaagaaaaactagtcaaattatgacaattcttggtcaaaca 169  Q
    ||||| |||||||| ||| | || ||| ||||||| ||| ||||||| |||| |  || | |||||||||| ||||| || ||| |||||||| ||||||    
T  14344348 cggatctatcccaaaaaagggaatgtcataaggaacgaggtgtcaaagacaacccatgaacagaaaaactaatcaaaatacgaccattcttggccaaaca 14344249  T
Q  170 acgactaaaagactaccctctatgaaaat--ttgaacaaaagtattggtattcccggatattttgttgtaattgaaccaactattttgtatttttcaagg 267  Q
    ||||||||||||| || |||| | ||||   |||||||||||||||| ||||||| |||||||| ||| |||||| |||||||| | |||| | |||||     
T  14344248 acgactaaaagaccactctctctaaaaaaaattgaacaaaagtattgatattcccagatattttattgcaattga-ccaactatat-gtatctgtcaagt 14344151  T
Q  268 cggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctg 346  Q
    || |||||||||||||||||| |||||||||| |||||||   |||||||||  ||||| |||| ||||| ||||||||    
T  14344150 cgactttggaggtacccttttggacacgagtcatcattccgattgagttaaaactagaaggcttcactttgttcacctg 14344072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 263 - 396
Target Start/End: Original strand, 17114734 - 17114867
Alignment:
Q  263 caaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttcttcttctatctc 362  Q
    |||||| ||||||||||||||||||| |||| | ||||||||||  || ||||||||| ||| | |||| ||||| ||||| || |||||||||| ||||    
T  17114734 caaggccgctttggaggtacccttttggacatgggtcctcattctggcagagttaaagctagcaggcttcactttgttcacatgtttcttcttctttctc 17114833  T
Q  363 tctgccttagtgctatcaaatagatttggatagt 396  Q
    |||| ||||||||| ||| ||||| ||| |||||    
T  17114834 tctgtcttagtgctctcagatagacttgcatagt 17114867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 242 - 396
Target Start/End: Original strand, 41035024 - 41035178
Alignment:
Q  242 aaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattc 341  Q
    |||||||||||  | ||||  |||||  ||||||||||  || |||| | |||| ||||||||||| |||||||||||| ||||| |||| |   |||||    
T  41035024 aaccaactattcagaatttgccaaggtagctttggaggagcctttttgggcacgggtcctcattccggctgagttaaagctagaaggcttcaaaatattc 41035123  T
Q  342 acctgcttcttcttctatctctctgccttagtgctatcaaatagatttggatagt 396  Q
    |||||||||||||||| | ||||||||||| |||| ||| ||||| |||||||||    
T  41035124 acctgcttcttcttctttttctctgccttattgctctcagatagacttggatagt 41035178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 396
Target Start/End: Original strand, 49491874 - 49492032
Alignment:
Q  237 aattgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactt 336  Q
    ||||||||||||||||  ||||    ||||||  |||||||||||||||||| | |||| ||||||||||| |||||||| ||| ||| | || | ||||    
T  49491874 aattgaaccaactattcggtatacgccaaggcaactttggaggtacccttttgggcacgggtcctcattccggctgagttgaagctagtaggc-tcactt 49491972  T
Q  337 tattcacctgcttcttcttctatctctctgccttagtgctatcaaatagatttggatagt 396  Q
    | ||||| |||||||||| || |||| ||||||||||||| || || ||| |||||||||    
T  49491973 tgttcacatgcttcttctgctttctccctgccttagtgctctctaacagacttggatagt 49492032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 376
Target Start/End: Original strand, 50903502 - 50903615
Alignment:
Q  263 caaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttcttcttctatctc 362  Q
    |||| ||||||||||||||||  ||| | |||| ||||||||| | |||||||| ||| ||| | |||| ||||| |||||||||||||||| || || |    
T  50903502 caagtcggctttggaggtaccgctttgggcacgggtcctcatttcggctgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttcac 50903601  T
Q  363 tctgccttagtgct 376  Q
    ||||||||||||||    
T  50903602 tctgccttagtgct 50903615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 19394156 - 19394260
Alignment:
Q  272 tttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttcttcttctatctctctgcctta 371  Q
    |||| |||||||||||| | |||| ||||||||||||||| ||||||||  |||| |||| |||||  |||| ||||||||||||| | ||||||| |||    
T  19394156 tttgaaggtacccttttgggcacgggtcctcattccagctaagttaaagcaagaaggcttcactttgctcacatgcttcttcttctttttctctgcttta 19394255  T
Q  372 gtgct 376  Q
    |||||    
T  19394256 gtgct 19394260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 3374429 - 3374309
Alignment:
Q  237 aattgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactt 336  Q
    |||| ||||||||||| ||||  || |||||| ||||||||| ||||||||| | |||  ||||||||||| |||||||||||  |||   |||| ||||    
T  3374429 aattaaaccaactattctgtagcttccaaggcagctttggagctacccttttgggcacatgtcctcattccggctgagttaaatctagccggcttcactt 3374330  T
Q  337 tattcacctgcttcttcttct 357  Q
    | ||||| |||||||||||||    
T  3374329 tgttcacttgcttcttcttct 3374309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 44163649 - 44163747
Alignment:
Q  133 aaaaactagtc-aaattatgacaattcttggtcaaacaacgactaaaagactaccctctat--gaaaatttgaacaaaagtattggtattcccggatatt 229  Q
    ||||||||||| ||| |||||| |||||||| |||||||||||||||| ||||| |||| |  |||||| ||| ||||||||||||||||||| ||||||    
T  44163649 aaaaactagtctaaagtatgaccattcttggccaaacaacgactaaaa-actactctctctaagaaaatatgatcaaaagtattggtattcccagatatt 44163747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 34566274 - 34566320
Alignment:
Q  270 gctttggaggtacccttttagacacgagtcctcattccagctgagtt 316  Q
    ||||||| | |||||||||| ||||||||||||||||||||||||||    
T  34566274 gctttggggatacccttttaaacacgagtcctcattccagctgagtt 34566320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 76 - 413
Target Start/End: Complemental strand, 29347086 - 29346742
Alignment:
Q  76 tatcccaagaaacgaaaggtcctaaggaaagagatgtcaaaaacaaacattgtaaagaaaaactagtcaaattatgacaattcttggtcaaacaacgact 175  Q
    |||||||||||| |||| | ||||| ||||||| ||||||| |||| ||||| | | |||| ||||||||| |||||| ||||  || |||||||| |||    
T  29347086 tatcccaagaaaagaaaaggcctaatgaaagaggtgtcaaatacaaccattgaacataaaa-ctagtcaaactatgaccattccaggccaaacaacaact 29346988  T
Q  176 aaaagactacc--ctctatgaaaatttgaacaaaagtattggtattcccggatattttgttgtaattgaaccaactattttgtatttttcaaggcggctt 273  Q
    |||||||| ||  |||||||||||||| |||||||||||||  |||| |   |||  | ||| ||||| |||||||||| ||||| | ||||||||||||    
T  29346987 aaaagactgccctctctatgaaaattttaacaaaagtattgacattctcatctatactcttgcaattggaccaactattatgtatctgtcaaggcggctt 29346888  T
Q  274 tggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctg------cttcttcttctatctctctgc 367  Q
    ||||||||| |||||   |||| ||||||||||| ||| |||||||| || || || | || || ||||||||      ||||||||||| | ||||||     
T  29346887 tggaggtactcttttgtgcacgggtcctcattccggctaagttaaagctataaggcatcacgttgttcacctgcttcttcttcttcttctttttctctgt 29346788  T
Q  368 cttagtgctatcaaatagatttggatagtcttccatctcaagcctc 413  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  29346787 cttagtgctctcaaatagacttggaaagtcttccatctcaagcctc 29346742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 80 - 415
Target Start/End: Original strand, 35526397 - 35526737
Alignment:
Q  80 ccaagaaacgaaaggtcctaaggaaagagatgtcaaaaacaaacattgtaaagaaaaactagtcaaattatgacaattcttggtcaaacaacgactaaaa 179  Q
    |||||||| |||| | ||||| |||| || |||||||||||| ||||||| | |||| |||||||||||||||| ||  |||| | |||||   ||||||    
T  35526397 ccaagaaaggaaatggcctaatgaaacaggtgtcaaaaacaaccattgtacataaaa-ctagtcaaattatgaccatgtttggcccaacaatagctaaaa 35526495  T
Q  180 gact--accctctatgaaaatttgaacaaaagtattggtattcccggatattttgttgtaattgaaccaactattttgtatttttcaaggcggctttgga 277  Q
    || |  || |||||||||||||||||||||||||||   |||||| |||||| | ||| ||||| ||||| ||||||| || |  |||| || |||||      
T  35526496 gattgcactctctatgaaaatttgaacaaaagtattaacattcccagatattctattgcaattgcaccaattattttgaatctgccaagacgtctttgtt 35526595  T
Q  278 ggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttcttcttctatctctctgcc----ttagt 373  Q
    ||||||||||| | |||| ||||||||||| || ||||||||| ||||| || | ||||| |||||||||||||||||||  |||| || |    |||||    
T  35526596 ggtacccttttgggcacgggtcctcattccggccgagttaaagctagaaggcatcactttgttcacctgcttcttcttcttactctttgtcttaattagt 35526695  T
Q  374 gctatcaaatagatttggatagtcttccatctcaagcctctt 415  Q
    ||| ||| ||||| ||||||||||||||||||||||||||||    
T  35526696 gctctcagatagacttggatagtcttccatctcaagcctctt 35526737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 242 - 396
Target Start/End: Complemental strand, 51524988 - 51524834
Alignment:
Q  242 aaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattc 341  Q
    |||||||||||||| || | ||||||  ||||||||||  ||||||| | |||| ||||||||||| |||||||||||| || || || | ||||||| |    
T  51524988 aaccaactattttgcatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 51524889  T
Q  342 acctgcttcttcttctatctctctgccttagtgctatcaaatagatttggatagt 396  Q
    |||||||||||||||| |||||| |||||| |||| ||| ||||| |||||||||    
T  51524888 acctgcttcttcttctttctctcagccttattgctctcagatagacttggatagt 51524834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 376
Target Start/End: Complemental strand, 16893201 - 16893064
Alignment:
Q  239 ttgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttacttta 338  Q
    ||||||||||||||  |||| |  |||||| |||||||||| ||||||||   |||| ||||||||||| |||||||| ||  ||| | |||| |||||     
T  16893201 ttgaaccaactattcggtatatggcaaggcagctttggaggcacccttttgagcacgggtcctcattccggctgagttgaacctagtaggcttcactttg 16893102  T
Q  339 ttcacctgcttcttcttctatctctctgccttagtgct 376  Q
    |||||||||||||| | || | | ||||||||||||||    
T  16893101 ttcacctgcttcttttgctttttatctgccttagtgct 16893064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 49106861 - 49107005
Alignment:
Q  69 ccggatttatcccaagaaacgaaaggtcctaaggaaagagatgtcaaaaacaaacattgtaaagaaaaactagtcaaat-tatgacaattcttggtcaaa 167  Q
    |||||| |||||||||||| | || |||||||| ||  || ||||||| |||| || || | | ||||| ||||||||  |||||| |||||||||| ||    
T  49106861 ccggatctatcccaagaaagggaatgtcctaagaaacaaggtgtcaaagacaaccaatgaacataaaaattagtcaaaagtatgaccattcttggtctaa 49106960  T
Q  168 caacgactaaaagacta--ccctctatgaaaatttgaacaaaagt 210  Q
    |||||||||||||||||  | ||||||||||||||| ||| ||||    
T  49106961 caacgactaaaagactactctctctatgaaaatttgcacagaagt 49107005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 394
Target Start/End: Complemental strand, 31067266 - 31067144
Alignment:
Q  273 ttggaggtacccttttagacacgagtcctcattccag-ctgagttaaagttagaatgctttactttattcacctgcttcttcttctatctctctgcctta 371  Q
    |||||| ||| ||||||| |||| ||||||||||| | ||||||||||| ||| | || | ||||| | ||| ||||||||||||| | |||||||||||    
T  31067266 ttggagttacacttttaggcacgggtcctcattcccgactgagttaaagctagcaagcctcactttgtgcacatgcttcttcttctttttctctgcctta 31067167  T
Q  372 gtgctatcaaatagatttggata 394  Q
    ||||| ||  ||||| |||||||    
T  31067166 gtgctctccgatagacttggata 31067144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 26796922 - 26796963
Alignment:
Q  345 tgcttcttcttctatctctctgccttagtgctatcaaataga 386  Q
    ||||||||||||| |||||||||||||||||| ||| |||||    
T  26796922 tgcttcttcttctttctctctgccttagtgctctcagataga 26796963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 134 - 415
Target Start/End: Complemental strand, 29369334 - 29369051
Alignment:
Q  134 aaaactagtcaaattatgacaattcttggtcaaacaacgactaaaagactaccctct--atgaaaatttgaacaaaagtattggtattcccggatatttt 231  Q
    ||||||||||||||||| || || |||   |||||||   |||||||||||||||||  ||||||||||||||||||| ||||  |||| |||||||| |    
T  29369334 aaaactagtcaaattataaccatacttaaccaaacaatagctaaaagactaccctctctatgaaaatttgaacaaaagcattgacattctcggatattct 29369235  T
Q  232 gttgtaattgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctt 331  Q
      || ||||| |||||||||| ||||| |  |||||||| |||||| ||| |||||| | |||| ||||||||||  ||| |||||||| | ||| || |    
T  29369234 aatgcaattggaccaactattctgtatctgccaaggcggatttggatgtatccttttgggcacgggtcctcattctggctcagttaaagcttgaaggcat 29369135  T
Q  332 tactttattcacctgcttcttcttctatctctctgccttagtgctatcaaatagatttggatagtcttccatctcaagcctctt 415  Q
     ||||||||||| ||||||||||||| | ||| || ||||||||| ||| ||||| ||||||||||||||| ||||||||||||    
T  29369134 cactttattcacgtgcttcttcttctttatctttgtcttagtgctctcagatagacttggatagtcttccagctcaagcctctt 29369051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 239 - 396
Target Start/End: Original strand, 27786783 - 27786940
Alignment:
Q  239 ttgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttacttta 338  Q
    |||||||||||||||||||| | ||||||  |||||||||| ||| |||| | ||||  |||||||||| |||||||||||| ||||| |||| ||||||    
T  27786783 ttgaaccaactattttgtatctgtcaaggtagctttggaggaaccattttgggcacggctcctcattccggctgagttaaagctagaaggcttcacttta 27786882  T
Q  339 ttcacctgcttcttcttctatctctctgccttagtgctatcaaatagatttggatagt 396  Q
    |||| |||||| ||||||| |||||| |||||| |||| ||| ||||| |||||||||    
T  27786883 ttcatctgcttattcttctttctctccgccttattgctctcagatagacttggatagt 27786940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 262 - 392
Target Start/End: Original strand, 36206439 - 36206569
Alignment:
Q  262 tcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttcttcttctatct 361  Q
    |||||||  ||||||||| || ||||||| ||||||||||||||||  || |||||||| ||||| |||| ||||||||||  ||||||||||||| |||    
T  36206439 tcaaggcaactttggaggaactcttttaggcacgagtcctcattccgactaagttaaagctagaaggcttcactttattcatttgcttcttcttctttct 36206538  T
Q  362 ctctgccttagtgctatcaaatagatttgga 392  Q
    ||||||||| ||||| ||| ||||| |||||    
T  36206539 ctctgccttggtgctctcagatagacttgga 36206569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 238 - 394
Target Start/End: Original strand, 28225708 - 28225864
Alignment:
Q  238 attgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttacttt 337  Q
    ||||||||||||||||| || ||  ||||   ||||| |||||| |||||| |||||  ||||||||||| |||||||||||||||  |  ||| |||||    
T  28225708 attgaaccaactattttatagttgccaagatagcttttgaggtatccttttggacacatgtcctcattccggctgagttaaagttaacaaacttcacttt 28225807  T
Q  338 attcacctgcttcttcttctatctctctgccttagtgctatcaaatagatttggata 394  Q
      |||| ||||||||||| | ||||||| |||||||||| ||| ||||| |||||||    
T  28225808 gatcacatgcttcttcttttctctctctaccttagtgctctcagatagacttggata 28225864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 271 - 394
Target Start/End: Original strand, 8831250 - 8831373
Alignment:
Q  271 ctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttcttcttctatctctctgcctt 370  Q
    |||||||| ||| |||||   |||| ||||||||||| |||||||||||| ||| | || | ||||| ||||  ||||||||||||| | ||||||||||    
T  8831250 ctttggagttacacttttgagcacgggtcctcattccggctgagttaaagctagcaggcctcactttgttcatgtgcttcttcttctctttctctgcctt 8831349  T
Q  371 agtgctatcaaatagatttggata 394  Q
    |||||| ||| ||||| |||||||    
T  8831350 agtgctctcagatagacttggata 8831373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 238 - 376
Target Start/End: Original strand, 26449531 - 26449669
Alignment:
Q  238 attgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttacttt 337  Q
    |||||||||||||||| |||| | || |||| | ||||||||||||||||| |||||||||||||||||| |||||| | ||| ||| | |||| ||| |    
T  26449531 attgaaccaactatttggtatatgtcgaggcagttttggaggtacccttttggacacgagtcctcattccggctgagctgaagctagtaggcttcactct 26449630  T
Q  338 attcacctgcttcttcttctatctctctgccttagtgct 376  Q
     |||||||||||||||| || ||||||||||||||||||    
T  26449631 gttcacctgcttcttctgctttctctctgccttagtgct 26449669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 288
Target Start/End: Complemental strand, 34548097 - 34547955
Alignment:
Q  148 tatgacaattcttggtcaaacaacgactaaaagactaccctct--atgaaaatttgaacaaaagtattggtattcccggatattttgttgtaattgaacc 245  Q
    |||||| |||||||| | |||||||||||||||||||| ||||  ||||||||||| |||||||||||||||||| | |||||| ||||| | |||||||    
T  34548097 tatgaccattcttggcctaacaacgactaaaagactactctctctatgaaaatttgcacaaaagtattggtattctcagatattctgttgcacttgaacc 34547998  T
Q  246 aactattttgtatttttcaaggcggctttggaggtaccctttt 288  Q
    ||||||| |||||    ||| | || |||||||||||||||||    
T  34547997 aactattctgtatcggccaaagaggttttggaggtaccctttt 34547955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 76 - 214
Target Start/End: Original strand, 7543938 - 7544075
Alignment:
Q  76 tatcccaagaaacgaaaggtcctaaggaaagagatgtcaaaaacaaacattgtaaagaaaaactagtcaaattatgacaattcttggtcaaacaacgact 175  Q
    |||||||||||| |||||| ||||| | ||||| ||||||| |||  || || | |||||| ||||||||| |||||| ||||| || ||||||||  ||    
T  7543938 tatcccaagaaaagaaagggcctaatgtaagaggtgtcaaatacagccactgaacagaaaa-ctagtcaaactatgaccattctaggccaaacaacagct 7544036  T
Q  176 aaaagactaccctctatgaaaatttgaacaaaagtattg 214  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  7544037 aaaagactgccctctatgaaaatttgaacaaaagtattg 7544075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 16099904 - 16099675
Alignment:
Q  21 aaccaatacatcagactcacataatgtaaaacctatgnnnnnnncaatccggatttatcccaagaaacgaaaggtcctaaggaaagagatgtcaaaaaca 120  Q
    ||||||||||||||| ||| |||||||||||||||||        || |||||| |||||| ||||| | || || |||||||| ||| || |||| |||    
T  16099904 aaccaatacatcagagtcatataatgtaaaacctatggaaagagaaa-ccggatctatcccgagaaagggaaagttctaaggaacgaggtgacaaagaca 16099806  T
Q  121 aacattgtaaagaaaaactagtcaaat-tatgacaattcttggtcaaacaacgactaaaagactaccctctatgaaaatttgaacaaaagtattggtatt 219  Q
    | || |||| | |||||||| |||||  ||||||  ||||| |  |||||||||||||||||| || ||||| ||| |||||||||||| |||| |||||    
T  16099805 accaatgtaca-aaaaactaatcaaaagtatgacctttcttagcaaaacaacgactaaaagaccactctctaagaatatttgaacaaaaatatttgtatt 16099707  T
Q  220 cccggatattttgttgtaattgaaccaactatt 252  Q
    |||  ||||||||||| ||||||||||||||||    
T  16099706 ccc-tatattttgttgcaattgaaccaactatt 16099675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 412
Target Start/End: Original strand, 19407866 - 19408021
Alignment:
Q  266 ggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttc---------ttcttc 356  Q
    ||||||||||||||||||||||| | |||| ||||||||||| |||||||||||| ||||| |  | ||||| ||||||||||||         ||||||    
T  19407866 ggcggctttggaggtacccttttgggcacgggtcctcattccggctgagttaaagctagaaggaatcactttgttcacctgcttcttcttcttcttcttc 19407965  T
Q  357 tatctctctgccttagtgctatcaaatagatttggatagtcttccatctcaagcct 412  Q
    | | ||||||  |||||||| ||| ||||  |||||||||||||||||||||||||    
T  19407966 tttatctctgttttagtgctctcagataggcttggatagtcttccatctcaagcct 19408021  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 29132280 - 29132362
Alignment:
Q  76 tatcccaagaaacgaaaggtcctaaggaaagagatgtcaaaaacaaacattgtaaagaaaaactagtcaaattatgacaattc 158  Q
    |||||||||||| |||| || ||||  |||||| ||||||| || | ||||||| | ||||||||||||||||||||| ||||    
T  29132280 tatcccaagaaaggaaaagttctaaaaaaagaggtgtcaaagacgaccattgtacataaaaactagtcaaattatgaccattc 29132362  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 376
Target Start/End: Complemental strand, 33191369 - 33191265
Alignment:
Q  272 tttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttattcacctgcttcttcttctatctctctgcctta 371  Q
    |||| |||||||||| | | |||| ||||||||  |||||||||||||| ||| | |||| |||||  |||| || |||||||||  | ||||||| |||    
T  33191369 tttgaaggtacccttctgggcacgggtcctcatgtcagctgagttaaagctagcaggcttcactttgctcacatgtttcttcttcattttctctgcttta 33191270  T
Q  372 gtgct 376  Q
    |||||    
T  33191269 gtgct 33191265  T

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Target: scaffold0531 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 394
Target Start/End: Complemental strand, 10382 - 10228
Alignment:
Q  240 tgaaccaactattttgtatttttcaaggcggctttggaggtacccttttagacacgagtcctcattccagctgagttaaagttagaatgctttactttat 339  Q
    ||||||||||||| ||||  |  |||| | ||||||||| ||| ||||||| |||| ||||||||||| |||||||||||  ||| | || | ||||| |    
T  10382 tgaaccaactattatgtagctgccaagacagctttggagttactcttttaggcacgggtcctcattccggctgagttaaaactagcaggcctcactttgt 10283  T
Q  340 tcacctgcttcttcttctatctctctgccttagtgctatcaaatagatttggata 394  Q
     ||| ||||||||||||| | |||||||||||||||| ||  ||||| |||||||    
T  10282 gcacgtgcttcttcttctttttctctgccttagtgctctccgatagacttggata 10228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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