View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_low_17 (Length: 424)
Name: NF1571_low_17
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 416
Target Start/End: Original strand, 40697575 - 40697976
Alignment:
| Q |
14 |
aaagttgaagtcagtaacacttttattcacttcttcttaccttgtgtaacattgaaggtctcatatgtttttgaaaaattgtttatatatggaccttttc |
113 |
Q |
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| T |
40697575 |
aaagttgaagtcagtaacacttttattcacttcttcttaccttgtgtaacattgaaggtctcatatgtttttgaaaaattgttcatatatggaccttttc |
40697674 |
T |
|
| Q |
114 |
cgtttattaacatccaacttggggaaacaatatccatagtgtccaacctgtccctaacatcctagttgaaattatatnnnnnnncagaattagcaaatcc |
213 |
Q |
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| T |
40697675 |
cgtttattaacatccaacttggggaaacaatatccatagtgtccaacctgtccctaacatcctagttcaaattatataaaaaa-cagaattagcaaatcc |
40697773 |
T |
|
| Q |
214 |
aaaacaaataacttgtatgataagaaagcattgaactaaactaccatgtagctcctattgtaccagtcaccaattaaaagatcaaactccgcttccggtt |
313 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40697774 |
aaaacaaataacttgtatgataagaaagcattaaactaaactaccatgtagctcctattgtaccagtcaccaattaaaagatcaaactccgcttccggtt |
40697873 |
T |
|
| Q |
314 |
ttggaaaaggaacacttatcactgctcggttgttaactcgaatcggaccaaaccctccaccggctttaaggaaattgatggaagggaaatagaataatgt |
413 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40697874 |
ttggaaaaggaacacttatcactgcgcgattgttaactcgaatcggaccaaaccctccaccggctttaaggaaattgatggaagggaaatagaagaatgt |
40697973 |
T |
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| Q |
414 |
acc |
416 |
Q |
| |
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| T |
40697974 |
acc |
40697976 |
T |
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