View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1571_low_2 (Length: 682)

Name: NF1571_low_2
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1571_low_2
NF1571_low_2
[»] chr8 (3 HSPs)
chr8 (19-325)||(38421359-38421665)
chr8 (367-674)||(38421702-38422020)
chr8 (19-66)||(38602430-38602476)
[»] chr5 (2 HSPs)
chr5 (36-66)||(14980628-14980658)
chr5 (34-66)||(14932413-14932445)
[»] chr4 (2 HSPs)
chr4 (29-59)||(1133040-1133070)
chr4 (28-66)||(27043751-27043789)
[»] chr3 (2 HSPs)
chr3 (33-66)||(26990146-26990179)
chr3 (22-66)||(26911696-26911740)
[»] chr1 (1 HSPs)
chr1 (33-66)||(6292608-6292641)
[»] chr7 (1 HSPs)
chr7 (19-59)||(19302491-19302530)
[»] chr6 (1 HSPs)
chr6 (19-59)||(33089608-33089648)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 38421359 - 38421665
Alignment:
Q  19 ctcacaaacacttgtgtcagtagataagctcaaataagtcattccaaaacatacccgtaaacccaataaccaaattcagagcttcatgtaatccaagagt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38421359 ctcacaaacacttgtgtcagtagataagctcaaataagtcattccaaaacatacccgtaaacccaataaccaaattcagagcttcatgtaatccaagact 38421458  T
Q  119 gctatttaggagagtagtatgcatatagtgaaatggaaatttattataagtttgtggtggagaagaaagagaaggcaataatataatgtatgcatataaa 218  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38421459 gctatttaggagagtattatgcgtatagtgaaatgaaaatttattataagtttgtggtggaaaagaaagagaaggcaataatataatgtatgcatataaa 38421558  T
Q  219 acagtaaaatttgtagcacgtaaagtttagttctttactaaggtaagtttcagagtaatatactttaacaaaccatggattgtgttgaaatagcatgatt 318  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38421559 acagtaaaatttggagcacgtaaagtttagttctttactaaggtaagtttcagagtaatatactttaacaaaccatggattgtgttgaaatagcatgatt 38421658  T
Q  319 cataagg 325  Q
    |||||||    
T  38421659 cataagg 38421665  T

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Target: chr8; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 367 - 674
Target Start/End: Original strand, 38421702 - 38422020
Alignment:
Q  367 ttagcttcttatcaatagaattctcctcaaagatttgagagttaaactgagaacatatgaagaactgatttagaacttgcaacatgtcttttgattttca 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38421702 ttagcttcttatcaatagaattctcctcaaagatttgagagttaaactgagaacatatgaagaactgatttagaacttgcaacatgtcttttgattttca 38421801  T
Q  467 agagccaaaaatgtttattgacatagaaaatatctctattcaatgaatatattgaaaaagagatttgctcaaatatacctgaaggatc-----------t 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||           |    
T  38421802 agagccaaaaatgtttattgacatagaaaatatctctattcaatgaatatattgagaaagagatttgctcaaatatacctgaaggatctttttttttttt 38421901  T
Q  556 tttaatttataagcagcattgttttatcatttctataagtaatccaacctaactaactaagcatcttaactcccctctcaattaactactatatcataac 655  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38421902 tttaatttataagcagcattgttttatcatttctataagtaatccaacctaactaactaagcatcttaactcccctctcaattaactactatatcataac 38422001  T
Q  656 cgttttagccagtataatc 674  Q
    |||||||||||||| ||||    
T  38422002 cgttttagccagtaaaatc 38422020  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 38602430 - 38602476
Alignment:
Q  19 ctcacaaacacttgtgtcagtagataagctcaaataagtcattccaaa 66  Q
    |||||||| |||| ||||||||||||||||||||||||||| ||||||    
T  38602430 ctcacaaa-acttatgtcagtagataagctcaaataagtcaatccaaa 38602476  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 14980628 - 14980658
Alignment:
Q  36 cagtagataagctcaaataagtcattccaaa 66  Q
    |||||||||||||||||||||||||||||||    
T  14980628 cagtagataagctcaaataagtcattccaaa 14980658  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 14932413 - 14932445
Alignment:
Q  34 gtcagtagataagctcaaataagtcattccaaa 66  Q
    |||||||||||||||||||||||||| ||||||    
T  14932413 gtcagtagataagctcaaataagtcaatccaaa 14932445  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 1133040 - 1133070
Alignment:
Q  29 cttgtgtcagtagataagctcaaataagtca 59  Q
    |||||||||||||||||||||||||||||||    
T  1133040 cttgtgtcagtagataagctcaaataagtca 1133070  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 27043789 - 27043751
Alignment:
Q  28 acttgtgtcagtagataagctcaaataagtcattccaaa 66  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  27043789 acttatgtcagtagataagctcaaataagtcaatccaaa 27043751  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 26990179 - 26990146
Alignment:
Q  33 tgtcagtagataagctcaaataagtcattccaaa 66  Q
    ||||||||||||||||||||||||||| ||||||    
T  26990179 tgtcagtagataagctcaaataagtcaatccaaa 26990146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 26911696 - 26911740
Alignment:
Q  22 acaaacacttgtgtcagtagataagctcaaataagtcattccaaa 66  Q
    ||||| |||| ||||||||||||| ||||||||||||| ||||||    
T  26911696 acaaaaacttatgtcagtagataaactcaaataagtcaatccaaa 26911740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 6292608 - 6292641
Alignment:
Q  33 tgtcagtagataagctcaaataagtcattccaaa 66  Q
    ||||||||||||||||||||||||||| ||||||    
T  6292608 tgtcagtagataagctcaaataagtcaatccaaa 6292641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 19302530 - 19302491
Alignment:
Q  19 ctcacaaacacttgtgtcagtagataagctcaaataagtca 59  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  19302530 ctcacaaa-acttatgtcagtagataagctcaaataagtca 19302491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 33089608 - 33089648
Alignment:
Q  19 ctcacaaacacttgtgtcagtagataagctcaaataagtca 59  Q
    |||||||| || | |||||||||||||||||||||||||||    
T  33089608 ctcacaaatacatatgtcagtagataagctcaaataagtca 33089648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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