View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_low_23 (Length: 354)
Name: NF1571_low_23
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 36 - 337
Target Start/End: Original strand, 13658417 - 13658718
Alignment:
| Q |
36 |
aagagcaatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaa |
135 |
Q |
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| T |
13658417 |
aagagcaatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaa |
13658516 |
T |
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| Q |
136 |
tgaagggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaatcatttttgtgggtgattaggccaaacatggtacaagaaaaaggact |
235 |
Q |
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| T |
13658517 |
tgaagggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggact |
13658616 |
T |
|
| Q |
236 |
attgaaggagcttgaggaagggactactaaagagaaagggatgattgtggggtgggttccacaagaggaagttttatcacacaaagcaattggtgccttt |
335 |
Q |
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| T |
13658617 |
attgaaggagcttgaggaagggactactaaagagaaagggatgattgtggggtgggttccacaagaggaagttttgtcacacaaagcaattggtgccttt |
13658716 |
T |
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| Q |
336 |
tt |
337 |
Q |
| |
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|| |
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| T |
13658717 |
tt |
13658718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 36 - 337
Target Start/End: Original strand, 13647889 - 13648190
Alignment:
| Q |
36 |
aagagcaatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaa |
135 |
Q |
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||||||||||||||| ||||||||||||| |||||| | |||||||| |||||||| |||||||| ||| |||||||||||||||| |||| || |||| |
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| T |
13647889 |
aagagcaatttcttcaaagtggatagaacctgcatggcgtggcttgactctcaaccattgaaatcagttatatatgttagctttggaagcactacaccaa |
13647988 |
T |
|
| Q |
136 |
tgaagggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaatcatttttgtgggtgattaggccaaacatggtacaagaaaaaggact |
235 |
Q |
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| T |
13647989 |
tgaagagagaagaaataattgagatttggcatggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggatt |
13648088 |
T |
|
| Q |
236 |
attgaaggagcttgaggaagggactactaaagagaaagggatgattgtggggtgggttccacaagaggaagttttatcacacaaagcaattggtgccttt |
335 |
Q |
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||| | |||||||||||||||||| ||| || ||||| ||||||| |||||||| ||||||||||||||||| ||||| || ||||||||||| ||| |
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| T |
13648089 |
attaagtgagcttgaggaagggactcgtaaggaaaaaggtttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgctttt |
13648188 |
T |
|
| Q |
336 |
tt |
337 |
Q |
| |
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|| |
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| T |
13648189 |
tt |
13648190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 41 - 337
Target Start/End: Original strand, 13652949 - 13653245
Alignment:
| Q |
41 |
caatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaatgaag |
140 |
Q |
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|||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||| ||| |||||| | |
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| T |
13652949 |
caatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacg |
13653048 |
T |
|
| Q |
141 |
ggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaatcatttttgtgggtgattaggccaaacatggtacaagaaaaaggactattga |
240 |
Q |
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| T |
13653049 |
agagaagaaatacttgagttttggcacggtttgttgaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaagactaataa |
13653148 |
T |
|
| Q |
241 |
aggagcttgaggaagggactactaaagagaaagggatgattgtggggtgggttccacaagaggaagttttatcacacaaagcaattggtgccttttt |
337 |
Q |
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| T |
13653149 |
aagaacttgaggaagggactagtaaggagaaaggtttgattgtggagtgggctccacaagaggaagttttgtcacataaggcaattggtgctttttt |
13653245 |
T |
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