View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_low_25 (Length: 326)
Name: NF1571_low_25
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 49511061 - 49510768
Alignment:
| Q |
14 |
attattctttaccaagatgcacattttctagatggttctgttccgtatattccattggatggagcagaacggtatgtgccgggaaaatgttgggaagata |
113 |
Q |
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| T |
49511061 |
attactctttaccaagatgcacattttctagatggttctgttccgtatattccattggatggagcagaacggtatgtgccgggaaaatgttgggaagata |
49510962 |
T |
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| Q |
114 |
cttgcaatgcaattaatgatgctaagcattttatttgcataactggttggtctgtttacacggaaataaccttgattagagatccaaacgagtcaacaag |
213 |
Q |
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| T |
49510961 |
cttgcaatgcaattaatgatgctaagcattttatttgcataactggttggtctgtttacacggaaataaccttgattagagatccaaacgagtcaacaag |
49510862 |
T |
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| Q |
214 |
agcaaccatcactcttggggagcttcttaagaagaaagccaatgaaggtgttaatgttcttatgcttgtttgggatgacagaacttctgttcct |
307 |
Q |
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| T |
49510861 |
agcaaccatcactcttggggagcttcttaagaagaaagccaatgaaggtgttaatgttcttatgcttgtttgggatgacagaacttctgttcct |
49510768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 306
Target Start/End: Complemental strand, 49521933 - 49521713
Alignment:
| Q |
86 |
tatgtgccgggaaaatgttgggaagatacttgcaatgcaattaatgatgctaagcattttatttgcataactggttggtctgtttacacggaaataacct |
185 |
Q |
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| T |
49521933 |
tatgtacctggaagatgttgggaagatatttacaatgccattatgaatgctaaagtctttatttacataactggttggtctgttcatacagaaataacct |
49521834 |
T |
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| Q |
186 |
tgattagagatccaaacgagtcaacaagagcaaccatcactcttggggagcttcttaagaagaaagccaatgaaggtgttaatgttcttatgcttgtttg |
285 |
Q |
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| T |
49521833 |
tgattagggacccaaacaagacaacagaaagtagtatcaccctaggagaaatgctcaagaaaaaagccaacgaaggtgttaatgttcttgtgcttgtttg |
49521734 |
T |
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| Q |
286 |
ggatgacagaacttctgttcc |
306 |
Q |
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| T |
49521733 |
ggatgacagaacctctgttcc |
49521713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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