View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_low_29 (Length: 307)
Name: NF1571_low_29
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 4760698 - 4760995
Alignment:
| Q |
1 |
ataaaaatacaccactagttcacttatctctttagctttgcaaagtttcttattctctatttgattgtaaattaaaataacttattcataagctcttata |
100 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4760698 |
ataaacatacaccactagttcacttatctctttagctttgcaaagtttcttattctctatttgattgtaaattaaaataacttattcataagctcttata |
4760797 |
T |
|
| Q |
101 |
ttcaataagtacttaagtcattcctaagtaattaaccttcttgtcctaaaaatgagagtgagtgagtgaatgaatgaattaccaggccaggttttccagt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4760798 |
ttcaataagtacttaagtcattcctaagtaattaaccttcttgtcctaaaaatgagagtgagtgagtgaatgaatgaattaccaggccaggttttccagt |
4760897 |
T |
|
| Q |
201 |
gagcttatcattaacttcaacaatctcaccagatattggagagtttacatcacttgttgccttaacactttcaacagctccgaaaccgttaccctttg |
298 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4760898 |
gagcttatcattaacttcaacaatctcaccagatattggagagtttacatcacttgttgccttaacactttcaacagctccgaaaccattaccctttg |
4760995 |
T |
|
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