View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1571_low_3 (Length: 613)

Name: NF1571_low_3
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1571_low_3
NF1571_low_3
[»] chr7 (12 HSPs)
chr7 (13-598)||(29900274-29900861)
chr7 (62-359)||(29886307-29886606)
chr7 (369-596)||(29886044-29886281)
chr7 (74-245)||(29896908-29897081)
chr7 (62-143)||(29900811-29900892)
chr7 (80-245)||(29904512-29904678)
chr7 (80-231)||(29888190-29888343)
chr7 (11-63)||(29886525-29886577)
chr7 (11-63)||(29900731-29900783)
chr7 (74-287)||(29857095-29857317)
chr7 (78-231)||(29075504-29075654)
chr7 (78-231)||(29108666-29108816)
[»] chr1 (1 HSPs)
chr1 (243-448)||(4365804-4366018)


Alignment Details
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 13 - 598
Target Start/End: Complemental strand, 29900861 - 29900274
Alignment:
Q  13 taggttaataatttgatagattcattacaatcaagctttaataacatggttttcacgtgacattgtgtaatgcatcaacataggttaataattggataga 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29900861 taggttaataatttgttagattcattacaatcaagctttaataacatggttttcacgtgacattgtgtaatgcatcaacataggttaataattggataga 29900762  T
Q  113 ttcattacagtcaagctttaataacatggttcatagtatagattataaattggataacatagtcaaacataccctaaaaagcataaacaccgacaaa--g 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  29900761 ttcattacagtcaagctttaataacatggttcatagtatagattataaattggataacatagtcaaacataccctaaaaagcataaacaccgacaaaacg 29900662  T
Q  211 ttttgaaattgtcatagaaattgacgctgacaaaatggctgaaaagaaatgctaaactggttgaaacttggaaatatgcctagaaccaaaagaaggggaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29900661 ttttgaaattgtcatagaaattgacgctgacaaaatggctgaaaagaaatgctaaactggttgaaacttggaaatatgcctagaaccaaaagaaggggaa 29900562  T
Q  311 aattaaatacagaaaaagtgcacttggatagagagagttcttgaatatannnnnnnnngtagaaacgacaactctagtccacaacgttgtgacatcagag 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||| ||||||||| |||||||||||||||    
T  29900561 aattaaatacagaaaaagtgcacttggatagagagagttcttgaatatttttttttttgtagaaacgacaactcaagtccacaaggttgtgacatcagag 29900462  T
Q  411 ttcagtttccttctgatatgagtaacagtggcaaccccgagttgatgcatcagctctctgcagtccttttatgccttttgaattgatgcattttctattt 510  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29900461 ttcagtttccttctgatatgagtaacagtggcatccccgagttgatgcatcagctctctgcagtctttttatgccttttgaattgatgcattttctattt 29900362  T
Q  511 ggacaaccacataaaacaataaaaccaaatgtaaaagagttgttaaacaataaccaacctcaaaggataaggtttcagatgaaaaagt 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29900361 ggacaaccacataaaacaataaaaccaaatgtaaaagagttgttaaacaataaccaacctcaaaggataaggtttcagatgaaaaagt 29900274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 62 - 359
Target Start/End: Complemental strand, 29886606 - 29886307
Alignment:
Q  62 ttttcacgtgacattgtgtaatgcatcaacataggttaataattggatagattcattacagtcaagctttaataacatggttcatagtatagattataaa 161  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29886606 ttttcatgtgacattgtgtaatgcatcaacataggttaataattggatagattcattacagtcaagctttaataacatggttcatagtatagattataaa 29886507  T
Q  162 ttggataacatagtcaaacataccctaaaaagcataaacaccgacaaagttttgaaattgtcatagaaattgacgctgacaaaatggctgaaaagaaatg 261  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29886506 ttggataacatagtcaaacataccctaaaaagcataaacactgacatagttttgaaattgtcatagaaattgacgctgacaaaatggctgaaaagaaatg 29886407  T
Q  262 ctaaactggttgaaac--ttggaaatatgcctagaaccaaaagaaggggaaaattaaatacagaaaaagtgcacttggatagagagagttcttgaatata 359  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29886406 ctaaactggttgaaacttttggaaatatgccaagaaccaaaagaaggggaaaattaaatacagaaaaagtgcacttggatagagagagttcttgaatata 29886307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 369 - 596
Target Start/End: Complemental strand, 29886281 - 29886044
Alignment:
Q  369 gtagaaacgacaactctagtccacaacgttgtgacatcagagttcagtttccttctgatatgagtaacagtggca-accccgagttgatgcatcagctct 467  Q
    ||||||| |||||||| ||||||||| ||||||| |||| |||| || |||||||||||||||||||||| ||||  ||||  ||||||| |||||||||    
T  29886281 gtagaaatgacaactcaagtccacaaggttgtgagatcatagtttagcttccttctgatatgagtaacaggggcacccccccggttgatgtatcagctct 29886182  T
Q  468 ctgcagtccttttatgccttttgaattgatgc-attttctatttggacaaccacataaaacaataaaac--------caaatgtaaaagagttgttaaac 558  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||||||||  || |||||| |||||||        |||||||||||||||||||||||    
T  29886181 ctgcagtccttttatgcctttggaattgatgcaattttcaatttggacaataacctaaaaccataaaacagtgaaatcaaatgtaaaagagttgttaaac 29886082  T
Q  559 aataaccaacctcaaaggataaggtttcagatgaaaaa 596  Q
    ||||||| |||||| |||  |||||||| |||||||||    
T  29886081 aataacctacctcagaggtgaaggtttcggatgaaaaa 29886044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 74 - 245
Target Start/End: Complemental strand, 29897081 - 29896908
Alignment:
Q  74 attgtgtaatgcatcaacataggttaataattggatagattcattacagtcaagctttaataacatggttcatagtatagattataaattggataacata 173  Q
    |||| ||||| |||||| | ||||||||||| | |||| || || ||  ||||| ||| ||||||||||| |||||||||||||  ||||||||||||||    
T  29897081 attgagtaatacatcaatagaggttaataatagaataggttaataacgatcaagatttcataacatggtttatagtatagattagtaattggataacata 29896982  T
Q  174 gtcaaacat--accctaaaaagcataaacaccgacaaagttttgaaattgtcatagaaattgacgctgacaaaa 245  Q
     ||||||||  ||||| |||  |||||||||| ||| ||||||||||||||||||||||| || ||| ||||||    
T  29896981 atcaaacataaacccttaaattcataaacaccaacatagttttgaaattgtcatagaaatagatgctcacaaaa 29896908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 29900892 - 29900811
Alignment:
Q  62 ttttcacgtgacattgtgtaatgcatcaacataggttaataattggatagattcattacagtcaagctttaataacatggtt 143  Q
    |||||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||| |||||||||||||||||||||    
T  29900892 ttttcacgtgacattgtgtaatgcatcagcgtaggttaataatttgttagattcattacaatcaagctttaataacatggtt 29900811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 80 - 245
Target Start/End: Complemental strand, 29904678 - 29904512
Alignment:
Q  80 taatgcatcaacataggttaataattggatagattcattacagtcaagctttaataacatggttcatagtatagattataaattggataacatagtcaaa 179  Q
    ||||||||||||  |||||||||||||||||| | ||| ||| ||| |||||||||| |||||| ||||| ||||||   |||||||||||||| |||||    
T  29904678 taatgcatcaactgaggttaataattggataggt-catgacaatcatgctttaataatatggtttatagtttagattcgtaattggataacataatcaaa 29904580  T
Q  180 cat--accctaaaaagcataaacaccgacaaagttttgaaattgtcatagaaattgacgctgacaaaa 245  Q
    |||  ||||| ||| ||||| ||||| ||| |||||| |||||||||||||||| || ||| ||||||    
T  29904579 cataaacccttaaatgcatacacaccaacatagttttaaaattgtcatagaaatagatgctcacaaaa 29904512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 80 - 231
Target Start/End: Complemental strand, 29888343 - 29888190
Alignment:
Q  80 taatgcatcaacataggttaataattggatagattcattacagtcaagctttaataacatggttcatagtatagattataaattggataacatagtcaaa 179  Q
    ||||||||||||| |||||||||||||||||| || || ||| |||| |||||||| ||||||| |||| ||||||||  |||||| ||||||| ||||     
T  29888343 taatgcatcaacagaggttaataattggataggttgatgacaatcaaactttaatagcatggtttatagaatagattagtaattgggtaacataatcaat 29888244  T
Q  180 cat--accctaaaaagcataaacaccgacaaagttttgaaattgtcatagaaat 231  Q
    |||  ||||| | | ||||||||||| ||| |||||| ||||| ||||||||||    
T  29888243 cataaacccttacatgcataaacaccaacatagttttaaaattatcatagaaat 29888190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 29886577 - 29886525
Alignment:
Q  11 cataggttaataatttgatagattcattacaatcaagctttaataacatggtt 63  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  29886577 cataggttaataattggatagattcattacagtcaagctttaataacatggtt 29886525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 29900783 - 29900731
Alignment:
Q  11 cataggttaataatttgatagattcattacaatcaagctttaataacatggtt 63  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  29900783 cataggttaataattggatagattcattacagtcaagctttaataacatggtt 29900731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 74 - 287
Target Start/End: Complemental strand, 29857317 - 29857095
Alignment:
Q  74 attgtgtaatgcatcaacataggttaataattggatagattcattacagtcaagctttaataacatggttcatagtatagatta-ta--aattggataac 170  Q
    ||||||||||||||||||| || ||||||||||||||||   || | | | || ||||| ||| |||||| |||||||||| || ||  ||||||||||     
T  29857317 attgtgtaatgcatcaacaaagcttaataattggatagaccaatgataataaatctttattaaaatggtttatagtatagactactagtaattggataaa 29857218  T
Q  171 ---atagtcaaacatac--cctaaaaagcataaacaccgacaaagttttgaaattgtcatagaaattgacgctgac-aaaatggctgaaaagaaatgcta 264  Q
       | | |||||||||   ||| ||| |||||| || | ||| |||| ||||||||||||||||||  | || ||  |||||| ||||||||| ||||||    
T  29857217 tatacattcaaacataaatccttaaatgcataaccaacaacatagttatgaaattgtcatagaaatcaatgccgaggaaaatgactgaaaagagatgcta 29857118  T
Q  265 aactggttgaaacttggaaatat 287  Q
    |||||| ||||||||||||||||    
T  29857117 aactggctgaaacttggaaatat 29857095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 29075654 - 29075504
Alignment:
Q  78 tgtaatgcatcaacataggttaataattggatagattcattacagtcaagctttaataacatggttcatagtatagattataaattggataacatagtca 177  Q
    ||||||||||||||| || |||||||||| |||| |  || | | ||||| |||||||| ||||||     |||||||||  ||||||| || |||||||    
T  29075654 tgtaatgcatcaacaaagcttaataattgaataggtcaatgataatcaagatttaataaaatggtt-----tatagattagtaattggacaatatagtca 29075560  T
Q  178 aacat--accctaaaaagcataaacaccgacaaagttttgaaattgtcatagaaat 231  Q
    | |||  ||||| ||| |||||||||||||||    | ||||||||||||||||||    
T  29075559 atcataaacccttaaatgcataaacaccgacacgactatgaaattgtcatagaaat 29075504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 29108816 - 29108666
Alignment:
Q  78 tgtaatgcatcaacataggttaataattggatagattcattacagtcaagctttaataacatggttcatagtatagattataaattggataacatagtca 177  Q
    ||||||||||||||| || |||||||||| |||| |  || | | ||||| |||||||| ||||||     |||||||||  ||||||| || |||||||    
T  29108816 tgtaatgcatcaacaaagcttaataattgaataggtcaatgataatcaagatttaataaaatggtt-----tatagattactaattggacaatatagtca 29108722  T
Q  178 a--acataccctaaaaagcataaacaccgacaaagttttgaaattgtcatagaaat 231  Q
    |  ||| ||||| ||| |||||||||||||||    | ||||||||||||||||||    
T  29108721 atcacaaacccttaaatgcataaacaccgacacgactatgaaattgtcatagaaat 29108666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 243 - 448
Target Start/End: Original strand, 4365804 - 4366018
Alignment:
Q  243 aaatggctgaaaagaaatgctaaactggttgaaacttggaaatat-------gcctagaaccaaaagaaggggaaaattaaatacagaaaaa---gtgca 332  Q
    ||||||||||||||| |||||||| |||||||||||| ||| |||       | | ||||||||||  |||||||||  |||| ||||||||   |||||    
T  4365804 aaatggctgaaaagagatgctaaaatggttgaaacttagaagtatctttggtgaccagaaccaaaattaggggaaaacaaaattcagaaaaaaaagtgca 4365903  T
Q  333 cttggatagagagagttcttgaatatannnnnnnnngtagaaacgacaactctagtccacaacgttgtg-acatcagagttcagtttccttctgatatga 431  Q
    |||||| ||||| ||||||||||| |          ||||||| || ||||| ||||||||| |||||| |||||||||||||| |||||||| ||||||    
T  4365904 cttggacagagaaagttcttgaatct--gtttttttgtagaaatgaaaactcaagtccacaaggttgtgtacatcagagttcagattccttcttatatga 4366001  T
Q  432 gtaacagtggcaacccc 448  Q
    || | ||||||| ||||    
T  4366002 gtgatagtggcatcccc 4366018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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