View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_low_31 (Length: 301)
Name: NF1571_low_31
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 45402944 - 45403225
Alignment:
| Q |
1 |
cccacctaagaaaacaacataccttgttccattagcaaacctagacttactcccaactttaatatctgctacgttagtcaccatatccttgtccacaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45402944 |
cccacctaagaaaacaacataccttgttccattagcaaacctagacttactcccaactttaatatctgctacgttagtcatcatatccttgtccacaaaa |
45403043 |
T |
|
| Q |
101 |
tcaccaataggagacaaagaagaagacaacgattcattctcatgctcatgttcatcctccaagtaacaaaaagacattgacctcacttcatacttttgac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45403044 |
tcaccaataggagacaaagaagaagacaacgattcattctcatgctcatgttcatcctccaagtaacaaaaagacattgacctcacttcataattttgac |
45403143 |
T |
|
| Q |
201 |
ctatgttgttgtcgttatcatcactctcactctccatggttgaatcaaaaagtcttcggcccttcaattttcctctctcaat |
282 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45403144 |
ctatgttgttgtcgttatcatcactctcactctccatggttgaatcaaaaagtcttcggcccttcaattttcctctctcaat |
45403225 |
T |
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