View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_low_33 (Length: 293)
Name: NF1571_low_33
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 8337891 - 8338170
Alignment:
| Q |
1 |
ttccttcattaaatgacacataatattgaccctcactttagaa---gatgatactgtacattagtatatatatagagtgcaacaaagagatgcacatcaa |
97 |
Q |
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| T |
8337891 |
ttccttcattaaatgacacataatattgaccctcactttagaagaagatgatactgtacattagtatatatatagagtgcaacaaagagatgcacatcaa |
8337990 |
T |
|
| Q |
98 |
agtaacaaaccacattgttatcagtacaactgagacaatgtgtacattgtcttttctcttgacaaccttaacaattttcatgtctatttcaacaacaaca |
197 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8337991 |
agtaacaaaccacattgttattagtacaactgagacaatgtgtacattgtcttttctcttgacaaccttaacaatttttatgtctatttcaacaacaaca |
8338090 |
T |
|
| Q |
198 |
tcacaatcatccattcaaacttttctcaattgtttttctcaaacttcaaattcccctatctctgaagtcatttacacacc |
277 |
Q |
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| T |
8338091 |
tcacaatcatccatttaaacttttctcaattgtttttctcaaacttcaaattcccctatctctgaagtcatttacacacc |
8338170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 64 - 234
Target Start/End: Original strand, 36100070 - 36100240
Alignment:
| Q |
64 |
tatatatagagtgcaacaaagagatgcacatcaaagtaacaaaccacattgttatcagtacaactgagacaatgtgtacattgtcttttctcttgacaac |
163 |
Q |
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| T |
36100070 |
tatatatagagcgcaacaatgagatgcacaaccaagtaacaaaccacgtttctgttagtaccatggaaacaatgagagcgttgttttttctcttgacaac |
36100169 |
T |
|
| Q |
164 |
cttaacaattttcatgtctatttcaacaacaacatcacaatcatccattcaaacttttctcaattgttttt |
234 |
Q |
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| T |
36100170 |
cttaacaattttcatgtctgtttcaacaacaacatcactatcacccattcaaaatcttctcaattgttttt |
36100240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 21482146 - 21482277
Alignment:
| Q |
143 |
attgtcttttctcttgacaaccttaacaattttcatgtctatttcaacaacaacatcacaatcatccattcaaacttttctcaattgtttttctcaaact |
242 |
Q |
| |
|
||||||||||||||| | ||| ||||||||| |||||||||||||||||||||||||||||||| || |||||| |||||||||||| ||||||||| || |
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| T |
21482146 |
attgtcttttctcttcataactttaacaattgtcatgtctatttcaacaacaacatcacaatcaccctttcaaaattttctcaattgcttttctcaatct |
21482245 |
T |
|
| Q |
243 |
tcaaattcccctatctctgaagtcatttacac |
274 |
Q |
| |
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|
| T |
21482246 |
ttgaattcctctatctctgatatcatttacac |
21482277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 36090933 - 36090839
Alignment:
| Q |
144 |
ttgtcttttctcttgacaaccttaacaattttcatgtctatttcaacaacaacatcacaatcatccattcaaacttttctcaattgtttttctca |
238 |
Q |
| |
|
|||| ||||||||||||||| ||||| || || ||||| |||| ||||||||||||||||| ||||| ||| |||||||| |||||||||||| |
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| T |
36090933 |
ttgttttttctcttgacaactataacagttgtcttgtctgtttctacaacaacatcacaatctcccatttaaaattttctcacttgtttttctca |
36090839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 34972199 - 34972148
Alignment:
| Q |
187 |
caacaacaacatcacaatcatccattcaaacttttctcaattgtttttctca |
238 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||||| || ||||||||||| |
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| T |
34972199 |
caacaacaacatcacaatcacccattcaaaattttcttaactgtttttctca |
34972148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 6838181 - 6838253
Alignment:
| Q |
143 |
attgtcttttctcttgacaaccttaacaattttcatgtctatttcaacaacaacatcacaatcatccattcaa |
215 |
Q |
| |
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||||| |||||| || |||||||||||||| || |||||| ||||||||||||| || ||||| | |||||| |
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| T |
6838181 |
attgtgttttcttatggcaaccttaacaattgtcttgtctaattcaacaacaacagcaaaatcacctattcaa |
6838253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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