View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1571_low_36 (Length: 281)

Name: NF1571_low_36
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1571_low_36
NF1571_low_36
[»] chr4 (8 HSPs)
chr4 (14-265)||(9568775-9569026)
chr4 (16-258)||(9573913-9574155)
chr4 (16-257)||(9594021-9594262)
chr4 (16-257)||(9582228-9582469)
chr4 (16-257)||(9587923-9588164)
chr4 (15-264)||(9602823-9603072)
chr4 (19-266)||(54295329-54295579)
chr4 (18-136)||(37895678-37895793)
[»] chr7 (1 HSPs)
chr7 (18-159)||(42446012-42446150)
[»] chr6 (5 HSPs)
chr6 (15-96)||(29012590-29012671)
chr6 (20-141)||(34281628-34281746)
chr6 (20-146)||(29131013-29131136)
chr6 (15-96)||(29299827-29299908)
chr6 (23-141)||(32960998-32961113)
[»] scaffold0054 (2 HSPs)
scaffold0054 (18-141)||(33709-33829)
scaffold0054 (18-141)||(40060-40180)
[»] scaffold0134 (1 HSPs)
scaffold0134 (15-159)||(16473-16614)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 9569026 - 9568775
Alignment:
Q  14 ttcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9569026 ttcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctc 9568927  T
Q  114 cacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataacaaatgacat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9568926 cacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatcaccgtaaccagcgtgctcacccataatagatacataacaaatgacat 9568827  T
Q  214 tatagtcatttctaagttcattgtaaccaaatccatgaagataagatgtatc 265  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9568826 tatagtcatttctaagttcatcgtaaccaaatccatgaagataagatgtatc 9568775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 9574155 - 9573913
Alignment:
Q  16 cttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctcca 115  Q
    ||||||||||| | |||||||||||||||| |||| | ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  9574155 cttcttcacactatcaatgacacacaccatccatgcaaacttgagtgccgtcaatacctgccaacgaataaggcatgtcaaaaacatcaagtatcctcca 9574056  T
Q  116 cgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataacaaatgacatta 215  Q
    |||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||| | |||| | |||||| | |||||||||||||||| ||||| |    
T  9574055 cgagttagttcttaagctatatatctcccagaatgggtctaaagacatatttccgtagctagcgcgttcacccttgatagatacataacaaaagacataa 9573956  T
Q  216 tagtcatttctaagttcattgtaaccaaatccatgaagataag 258  Q
    |||||||||||||| |  |  ||||||||||||||||||||||    
T  9573955 tagtcatttctaagattgtcataaccaaatccatgaagataag 9573913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 9594021 - 9594262
Alignment:
Q  16 cttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctcca 115  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| |||||||| ||||||||| ||||||||||||    
T  9594021 cttcttcagccaaccaatgacacacaccatccatgtagacttgagtgccgtcaatacgtgccaatgaacaaggcatgccaaaaacattaagtatcctcca 9594120  T
Q  116 cgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataacaaatgacatta 215  Q
    |||||||||||||||||||||||||  ||| |  |||||||||| ||||||||| || ||| | || |||||| |||||| ||| ||||| ||||| |||    
T  9594121 cgagttagttcttaagctatatatcacccaaattgggtctaaagacatatctccatagccatcatgttcacccctaatagttacgtaacatatgacctta 9594220  T
Q  216 tagtcatttctaagttcattgtaaccaaatccatgaagataa 257  Q
     ||||||||||||| |  | ||||||||||||||||||||||    
T  9594221 gagtcatttctaagattgtcgtaaccaaatccatgaagataa 9594262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 9582228 - 9582469
Alignment:
Q  16 cttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctcca 115  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| ||||||||  | |||||||||||||||||||    
T  9582228 cttcttcagccaaccaatgacacacaccatccatgtagacttgagtgccgtcaatacgtgccaatgaacaaggcatgctagaaacatcaagtatcctcca 9582327  T
Q  116 cgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataacaaatgacatta 215  Q
    |||||||||||||||||||||||||  ||| |  |||||||||| ||||  ||| || |||||||| |||||| |||||| ||| | ||| ||||| |||    
T  9582328 cgagttagttcttaagctatatatcacccaaattgggtctaaagacatacatccatagccagcgtgttcacccgtaatagttacgtgacagatgacctta 9582427  T
Q  216 tagtcatttctaagttcattgtaaccaaatccatgaagataa 257  Q
    |||||||||||||| |  | ||| ||||||||||||||||||    
T  9582428 tagtcatttctaagattgtcgtagccaaatccatgaagataa 9582469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 9587923 - 9588164
Alignment:
Q  16 cttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctcca 115  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| ||||||||  | |||||||||||||||||||    
T  9587923 cttcttcagccaaccaatgacacacaccatccatgtagacttgagtgccgtcaatacgtgccaatgaacaaggcatgctagaaacatcaagtatcctcca 9588022  T
Q  116 cgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataacaaatgacatta 215  Q
    |||||||||||||||||||||||||  ||| |  |||||||||| ||||  ||| || |||||||| |||||| |||||| ||| | ||| ||||| |||    
T  9588023 cgagttagttcttaagctatatatcacccaaattgggtctaaagacatacatccatagccagcgtgttcacccgtaatagttacgtgacagatgacctta 9588122  T
Q  216 tagtcatttctaagttcattgtaaccaaatccatgaagataa 257  Q
    |||||||||||||| |  | ||| ||||||||||||||||||    
T  9588123 tagtcatttctaagattgtcgtagccaaatccatgaagataa 9588164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 264
Target Start/End: Original strand, 9602823 - 9603072
Alignment:
Q  15 tcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcc--- 111  Q
    |||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||  |||||| |||||||||||||||||||    ||||||||       
T  9602823 tcttcttcccacaaccaatgacacacaccatccatgtagacttgactgccgtcaataagtgccaaggaataaggcatgtcaaaaa---taagtatccttt 9602919  T
Q  112 tccacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataacaaatgac 211  Q
    |||||||||||||||||||||||||| ||  ||| |  |||||||||| ||||| ||| || | |||||| | |||| |||||| ||  ||||| |||||    
T  9602920 tccacgagttagttcttaagctatatttcacccaaattgggtctaaagacatatgtccatagctagcgtgttgacccgtaatagttatgtaacatatgac 9603019  T
Q  212 attatagtcatttctaagttcattgtaaccaaatccatgaagataagatgtat 264  Q
    |||||| ||||||||||| || | |||||||||||||||||||||||| ||||    
T  9603020 attataatcatttctaaggtcgtcgtaaccaaatccatgaagataagacgtat 9603072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 54295329 - 54295579
Alignment:
Q  19 cttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgc------caaagaataaggcatgtcaaaaacatcaagtatcct 112  Q
    ||||||||||||||||||||||||||| |||||||||||  | ||| ||| || |||       ||||||||||||||||||||   |||||||||||||    
T  54295329 cttcacacaaccaatgacacacaccatccatgtagactttggagccctcactatatgggattgacaaagaataaggcatgtcaa---catcaagtatcct 54295425  T
Q  113 ccacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataacaaatgaca 212  Q
    ||| ||||||||||||||||||||||||| |||||| | |||||||| |||| ||||||   ||||||  ||| |   |||| |||||||||||||||      
T  54295426 ccatgagttagttcttaagctatatatctcccagaaggagtctaaagacataactccgtggtcagcgtattcaacatcaatacatacataacaaatgagc 54295525  T
Q  213 ttatagtcatttctaagttcattgtaaccaaatccatgaagataagatgtatct 266  Q
    |||||||||||| ||||||| | ||||||||||||||||  |||| ||||||||    
T  54295526 ttatagtcatttataagttcgtcgtaaccaaatccatgattataatatgtatct 54295579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 37895793 - 37895678
Alignment:
Q  18 tcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacg 117  Q
    |||||||||||||||||||||||  ||| ||| |||||||| ||||| ||  ||||| |||||||||||||||||||   |||||||||| |||||||||    
T  37895793 tcttcacacaaccaatgacacacttcatccatatagacttgggtgccctccttacattccaaagaataaggcatgtc---aacatcaagtttcctccacg 37895697  T
Q  118 agttagttcttaagctata 136  Q
    | ||| |||||| ||||||    
T  37895696 aattacttcttaggctata 37895678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 42446150 - 42446012
Alignment:
Q  18 tcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacg 117  Q
    ||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||| |||||||||||||||||||   |||||||||| |||||||||    
T  42446150 tcttcacacaaccaatgacacactccatccatgtagacttgggtgccctcaatacattccaaagaataaggcatgtc---aacatcaagtttcctccacg 42446054  T
Q  118 agttagttcttaagctatatatcttccagaacgggtctaaag 159  Q
     |||| ||||||  |||||||||| ||| || | ||||||||    
T  42446053 ggttacttcttagactatatatctcccataaggagtctaaag 42446012  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 29012671 - 29012590
Alignment:
Q  15 tcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaa 96  Q
    ||||||||| |||||||||||||||| |||| |||||||||||| ||||||||||||||  |||||||||| ||||||||||    
T  29012671 tcttcttcagacaaccaatgacacactccatccatgtagacttgggtgccgtcaatacagtccaaagaatacggcatgtcaa 29012590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 34281746 - 34281628
Alignment:
Q  20 ttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacgag 119  Q
    |||||||||||||||||||||||| | |||||||| ||| ||||| ||| ||||  ||| |||| | ||||||||   ||||||||||   |||||||||    
T  34281746 ttcacacaaccaatgacacacaccgtccatgtagatttgggtgccttcagtacagtccacagaagacggcatgtc---aacatcaagttctctccacgag 34281650  T
Q  120 ttagttcttaagctatatatct 141  Q
    ||| | |||| |||||||||||    
T  34281649 ttactccttaggctatatatct 34281628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 29131136 - 29131013
Alignment:
Q  20 ttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacgag 119  Q
    |||||||||||||||||||||||||| ||| |||||||| || ||  || ||||  | || ||||||||||||||   ||||||||||   ||||| |||    
T  29131136 ttcacacaaccaatgacacacaccatccatatagacttgggttcctgcattacagtctaacgaataaggcatgtc---aacatcaagttctctccatgag 29131040  T
Q  120 ttagttcttaagctatatatcttccag 146  Q
    ||| || || |||||||||||| ||||    
T  29131039 ttactttttgagctatatatctcccag 29131013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 29299908 - 29299827
Alignment:
Q  15 tcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaa 96  Q
    |||| ||||||||||||||| ||||| |||| |||||||||||| ||||| ||| |||   |  ||||||||||||||||||    
T  29299908 tctttttcacacaaccaatggcacactccatccatgtagacttgggtgccctcagtacgatcagaagaataaggcatgtcaa 29299827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 32960998 - 32961113
Alignment:
Q  23 acacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacgagtta 122  Q
    ||||||||||||||||||||||| ||||||||  || ||||| ||    |||   ||||||   ||||||||||   |||||||| ||||||||||||||    
T  32960998 acacaaccaatgacacacaccatccatgtagagatgggtgccctcggaccattttaaagaaggtggcatgtcaa---catcaagtttcctccacgagtta 32961094  T
Q  123 gttcttaagctatatatct 141  Q
     |||||| |||||||||||    
T  32961095 cttcttacgctatatatct 32961113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 33709 - 33829
Alignment:
Q  18 tcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacg 117  Q
    ||||||||||||||||||||||| |||| |||||||||||| || || || |||||     ||||| | ||||||||   || ||||||| |||||||||    
T  33709 tcttcacacaaccaatgacacactccatccatgtagacttgggttccctctatacagtaagaagaagatggcatgtc---aatatcaagtttcctccacg 33805  T
Q  118 agttagttcttaagctatatatct 141  Q
    ||||| |||||| |||||||||||    
T  33806 agttacttcttaggctatatatct 33829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 40060 - 40180
Alignment:
Q  18 tcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctccacg 117  Q
    ||||||||||||||||||||||| |||| |||||||||||| || || || |||||     ||||| | ||||||||   || ||||||| | |||||||    
T  40060 tcttcacacaaccaatgacacactccatccatgtagacttgggttccctctatacagtaagaagaagatggcatgtc---aatatcaagttttctccacg 40156  T
Q  118 agttagttcttaagctatatatct 141  Q
    ||||| |||||| |||||||||||    
T  40157 agttacttcttaggctatatatct 40180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 16473 - 16614
Alignment:
Q  15 tcttcttcacacaaccaatgacacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcctcc 114  Q
    |||| |||||||||||||||||| |   |||  ||||||||||| ||||| ||| |||||    ||||| | ||||||||||   | |||||| ||||||    
T  16473 tctttttcacacaaccaatgacagatttcatctatgtagacttgggtgccctcattacattttgaagaaaatggcatgtcaa---cgtcaagtttcctcc 16569  T
Q  115 acgagttagttcttaagctatatatcttccagaacgggtctaaag 159  Q
    |||||||| || ||| ||||||||||| ||| || || |||||||    
T  16570 acgagttacttgttaggctatatatctcccataaaggttctaaag 16614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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