View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_low_41 (Length: 254)
Name: NF1571_low_41
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 7726510 - 7726748
Alignment:
| Q |
4 |
ggtggaaagtcaatggttttggtgaataaaaatgttgcatgtcttggatttgtggatggtggtgaagagtcaagaacagctgttgttattggtggacacc |
103 |
Q |
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| T |
7726510 |
ggtggaaattcaatggttttggtgaataaaaatgttgcatgtcttggatttgtggatggtggtaaagagccaagaacagctgttgttattggtggacacc |
7726609 |
T |
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| Q |
104 |
agttggaggacattgtgttggagtttgatttggtttcttctaaattaggattcagctcttccctccgccttcaaaatgcaagttgttccaactccaactc |
203 |
Q |
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| T |
7726610 |
agttggaggacattgtattggagtttgatttggtttcttctaaattaggattcagctcttccctcctccttcaaaatgcaagttgttccaactccaactc |
7726709 |
T |
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| Q |
204 |
agtgaataagatggtaaaatctggtgaaagtttcatttc |
242 |
Q |
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| T |
7726710 |
agtgaataagatggtaaaatctggtgaaagtttcatttc |
7726748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 7733929 - 7734170
Alignment:
| Q |
1 |
tttggtggaaagtcaatggttttggtgaataaaaatgttgcatgtcttggatttgtggatggtggtgaagagtcaagaacagctgttgttattggtggac |
100 |
Q |
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| T |
7733929 |
tttggtggaaattctatggtcttggtgagtaaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaacagctgttgttattggtggac |
7734028 |
T |
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| Q |
101 |
accagttggaggacattgtgttggagtttgatttggtttcttctaaattaggattcagctcttccctccgccttcaaaatgcaagttgttccaactccaa |
200 |
Q |
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| T |
7734029 |
accagttggaggacattgtattggagtttgatttggtttcttctaaattaggattcagctcttccttgctccttcaaaatgcaagttgttccaactccaa |
7734128 |
T |
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| Q |
201 |
ctcagtgaataagatggtaaaatctggtgaaagtttcatttc |
242 |
Q |
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| T |
7734129 |
ttcagtgaataagatggtaaaatctagtgaaagtttcatttc |
7734170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 7711619 - 7711811
Alignment:
| Q |
1 |
tttggtggaaagtcaatggttttggtgaataaaaatgttgcatgtcttggatttgtggatggtggtgaagagtcaagaacagctgttgttattggtggac |
100 |
Q |
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| T |
7711619 |
tttggtggaaattcaatggtgttggtgagtaaaaatgttgcatgtcttggatttgtggatggtggtaaagagccaagaacagctgttgtgattggtggac |
7711718 |
T |
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| Q |
101 |
accagttggaggacattgtgttggagtttgatttggtttcttctaaattaggattcagctcttccctccgccttcaaaatgcaagttgttcca |
193 |
Q |
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| T |
7711719 |
accaattggaggacaatctattggagtttgatttgatttcttctaaattaggattcagctcttccttgctccttcaaaatggaagttgttcca |
7711811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 7745973 - 7745818
Alignment:
| Q |
1 |
tttggtggaaagtcaatggttttggtgaataaaaatgttgcatgtcttggatttgtggatggtggtgaagagtcaagaacagctgttgttattggtggac |
100 |
Q |
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| T |
7745973 |
tttggtggaaattctatggccttggtgagtaaaaatgtagcatgtcttggatttgtggatggtggtaatgagccaagaactgctgttgtgattggtggac |
7745874 |
T |
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| Q |
101 |
accagttggaggacattgtgttggagtttgatttggtttcttctaaattaggattc |
156 |
Q |
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| T |
7745873 |
accaattggaggacaatctattggagtttgatttggtttcttctaaattaggattc |
7745818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 3 - 196
Target Start/End: Original strand, 7704299 - 7704492
Alignment:
| Q |
3 |
tggtggaaagtcaatggttttggtgaataaaaatgttgcatgtcttggatttgtggatggtggtgaagagtcaagaacagctgttgttattggtggacac |
102 |
Q |
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| T |
7704299 |
tggtggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgtggatggtggtaaagaaccaagaagatcaattgttattggtgggcac |
7704398 |
T |
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| Q |
103 |
cagttggaggacattgtgttggagtttgatttggtttcttctaaattaggattcagctcttccctccgccttcaaaatgcaagttgttccaact |
196 |
Q |
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| T |
7704399 |
caattggaggagaatctattggagtttgatttagtttcttccaaattaggattcatctcttcccttccccttcataattcaagatattccaact |
7704492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 7699599 - 7699786
Alignment:
| Q |
4 |
ggtggaaagtcaatggttttggtgaataaaaatgttgcatgtcttggatttgtggatggtggtgaagagtcaagaacagctgttgttattggtggacacc |
103 |
Q |
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| T |
7699599 |
ggtggaaattcaatggtgttggtgaataaaaaggtagcaagtcttggatttgtggatggtggtaaaaagccaacaacatcagttgttattggtgggcacc |
7699698 |
T |
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| Q |
104 |
agttggaggacattgtgttggagtttgatttggtttcttctaaattaggattcagctcttccctccgccttcaaaatgcaagttgttc |
191 |
Q |
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| T |
7699699 |
aattggaggacaatctactggagtttgatttagtttcatctaaattaggattcagctcttccctgcttcttcataatgcaagatgttc |
7699786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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