View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_low_42 (Length: 252)
Name: NF1571_low_42
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_low_42 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 44956043 - 44956288
Alignment:
| Q |
7 |
tcgaagaatatcctgttatgagtgaagtataaatcaattttaattgtgttagttagagaattagttagttgtggattgtatgatgtgcattggacctagt |
106 |
Q |
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| T |
44956043 |
tcgaagaaaaccctgttatgagtgaagtataaatcaattttaattgtgttagttagagaattagttagttgtggattgtatgatgtgcattggacctagt |
44956142 |
T |
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| Q |
107 |
ttgttatgtaagaccaaatccatatgaagtgcacaagtgtgtaaataagtgacatatccattgatagaagttagtgcagtttatcgttttttaaattcca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44956143 |
ttgttatgtaagaccaaatccatatgaagtgcacaagtgtgtaaataagtgagatatccattgatagaagttagtgcagtttatcgttttttaaattcca |
44956242 |
T |
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| Q |
207 |
tttcctaactgtttcacacttcctccatcaatttcaaaaatattga |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44956243 |
tttcctaactgtttcacacttcctccatcaatttcaaaaatattga |
44956288 |
T |
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