View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_low_44 (Length: 250)
Name: NF1571_low_44
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 36716808 - 36717049
Alignment:
| Q |
1 |
tgttgagtttaatttgaatggtatataaattaagtcatcgttgtcaatgttctgatgaattttctgtatgtttagttccatcttattaatttgaatatga |
100 |
Q |
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| T |
36716808 |
tgttgagtttaatttgaattgtatataaattaagtcatcgttgtcaaagttctgatgaattttctgtatgtttagttccatcttattaatttgaatatga |
36716907 |
T |
|
| Q |
101 |
actaaattagtgttgttaatattgtgtttaggcgattgagagaaggagggagagacagggaactgaggaaattgagcaaactggaacaccagttcatgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36716908 |
actaaattagtgttgttaatattgtgtttaggcgattgagagaaggagggagagacagggaactgaggaaattgagcaaactggaacaccagttcatgct |
36717007 |
T |
|
| Q |
201 |
aaccagctgaccattttctctgatccatcttcattctctgct |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717008 |
aaccagctgaccattttctctgatccatcttcattctctgct |
36717049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 1482090 - 1482261
Alignment:
| Q |
71 |
tttagttccatcttattaatttgaatatgaactaaattagtgttgttaatattgtgtttaggcgattgagagaaggagggagagacagggaactgaggaa |
170 |
Q |
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|||||||| |||| |||| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1482090 |
tttagttctatctgattagtttgaatttgaattaatttagtgttgttaatattgtgtttaggcgattgagagaaggagggagagactgggaactgaggag |
1482189 |
T |
|
| Q |
171 |
attgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1482190 |
attgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
1482261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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