View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1571_low_46 (Length: 246)

Name: NF1571_low_46
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1571_low_46
NF1571_low_46
[»] chr6 (4 HSPs)
chr6 (20-235)||(6047219-6047434)
chr6 (24-128)||(15950803-15950908)
chr6 (21-84)||(23631634-23631697)
chr6 (53-128)||(21698713-21698789)
[»] chr7 (2 HSPs)
chr7 (20-128)||(7097374-7097483)
chr7 (24-128)||(29526831-29526936)
[»] chr1 (5 HSPs)
chr1 (24-128)||(11420319-11420424)
chr1 (24-128)||(26418746-26418851)
chr1 (24-128)||(32108429-32108534)
chr1 (39-123)||(28214259-28214344)
chr1 (23-59)||(40454553-40454589)
[»] scaffold0071 (1 HSPs)
scaffold0071 (20-128)||(52679-52788)
[»] chr4 (2 HSPs)
chr4 (24-128)||(47782994-47783099)
chr4 (53-128)||(25553252-25553328)
[»] chr3 (2 HSPs)
chr3 (24-128)||(32073565-32073670)
chr3 (39-128)||(29704653-29704743)
[»] chr5 (1 HSPs)
chr5 (53-128)||(11619159-11619235)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 6047434 - 6047219
Alignment:
Q  20 ggaatttcataaaagatgtggaagctaggtaaggatgtggcttccttaactaattcatgagcaacccattcacttgcctcttaataaatgcaacatgaga 119  Q
    |||||||||| |||||| |||||||||||||||||||||| ||||||| | |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  6047434 ggaatttcatcaaagatatggaagctaggtaaggatgtggtttccttagccaatttatgagcaacccattcgcttgcctcttaataaatgcaacatgaga 6047335  T
Q  120 gtttgttaattgaacactataaaactggatactattatccacaaaaatagagtaaattcgataatatctctccctctgctattaaaataatactatccat 219  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  6047334 gtttgttaattgaacactataaaactggatactattatcgacaaaaatagagtaaattcggtaatatctctccctctgctattaaaataatactattcat 6047235  T
Q  220 aagctattttcttcga 235  Q
    |||||||||| |||||    
T  6047234 aagctatttttttcga 6047219  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 15950908 - 15950803
Alignment:
Q  24 tttcataaaagatgtggaagctaggtaaggatgtggcttccttaactaattcatgagcaacc-cattcacttgcctcttaataaatgcaacatgagagtt 122  Q
    |||||| ||||||||||||||||||     |||||||| ||||| ||||||||||||||||| ||||  |||||||| || ||||  | |||||||||||    
T  15950908 tttcatcaaagatgtggaagctaggacctaatgtggctgccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 15950809  T
Q  123 tgttaa 128  Q
    ||||||    
T  15950808 tgttaa 15950803  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 23631697 - 23631634
Alignment:
Q  21 gaatttcataaaagatgtggaagctaggtaaggatgtggcttccttaactaattcatgagcaac 84  Q
    ||||||||| |||||||||||||||||| ||   ||||||| ||||| |||| |||||||||||    
T  23631697 gaatttcatcaaagatgtggaagctagggaatagtgtggctgccttagctaactcatgagcaac 23631634  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 21698789 - 21698713
Alignment:
Q  53 gatgtggcttccttaactaattcatgagcaacc-cattcacttgcctcttaataaatgcaacatgagagtttgttaa 128  Q
    ||||||||| ||||| ||||  ||||||||||| ||||  |||||||| |||||||  | |||||||||||||||||    
T  21698789 gatgtggctgccttagctaaaacatgagcaacctcatttgcttgcctcctaataaactcgacatgagagtttgttaa 21698713  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 7097374 - 7097483
Alignment:
Q  20 ggaatttcataaaagatgtggaagctaggtaaggatgtggcttccttaactaattcatgagcaacc-cattcacttgcctcttaataaatgcaacatgag 118  Q
    |||||||||| |||||||||||||||||||||  |||||||| ||||| |||| |||||||||||| ||||  ||||||||||||||||  | |||| ||    
T  7097374 ggaatttcattaaagatgtggaagctaggtaataatgtggctgccttagctaactcatgagcaacctcatttgcttgcctcttaataaactcgacataag 7097473  T
Q  119 agtttgttaa 128  Q
    ||||| ||||    
T  7097474 agtttattaa 7097483  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 29526936 - 29526831
Alignment:
Q  24 tttcataaaagatgtggaagctaggtaaggatgtggcttccttaactaattcatgagcaacc-cattcacttgcctcttaataaatgcaacatgagagtt 122  Q
    |||||| ||||||||||||||||||     |||||||| ||||| ||||||||||||||||| ||||  |||||||| || ||||  | |||||||||||    
T  29526936 tttcatcaaagatgtggaagctaggacctaatgtggctgccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 29526837  T
Q  123 tgttaa 128  Q
    ||||||    
T  29526836 tgttaa 29526831  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 11420319 - 11420424
Alignment:
Q  24 tttcataaaagatgtggaagctaggtaaggatgtggcttccttaactaattcatgagcaacc-cattcacttgcctcttaataaatgcaacatgagagtt 122  Q
    |||||| ||||||||||||||||||     |||||||| ||||||||||||||||| ||||| |||| ||||||||| |||||||  | |||||||||||    
T  11420319 tttcatcaaagatgtggaagctaggacctaatgtggctgccttaactaattcatgaacaacctcatttacttgcctcctaataaactcgacatgagagtt 11420418  T
Q  123 tgttaa 128  Q
    ||||||    
T  11420419 tgttaa 11420424  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 26418746 - 26418851
Alignment:
Q  24 tttcataaaagatgtggaagctaggtaaggatgtggcttccttaactaattcatgagcaacc-cattcacttgcctcttaataaatgcaacatgagagtt 122  Q
    |||||| ||||||||||||||||||     |||||||| ||||| ||||||||||||||||| ||||  |||||||| || ||||  | |||||||||||    
T  26418746 tttcatcaaagatgtggaagctaggacctaatgtggctgccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 26418845  T
Q  123 tgttaa 128  Q
    ||||||    
T  26418846 tgttaa 26418851  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 32108534 - 32108429
Alignment:
Q  24 tttcataaaagatgtggaagctaggtaaggatgtggcttccttaactaattcatgagcaacc-cattcacttgcctcttaataaatgcaacatgagagtt 122  Q
    |||||| ||||||||||||||||||     |||||||| ||||| ||||||||||||||||| ||||  |||||||| || ||||  | |||||||||||    
T  32108534 tttcatcaaagatgtggaagctaggacctaatgtggctgccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 32108435  T
Q  123 tgttaa 128  Q
    ||||||    
T  32108434 tgttaa 32108429  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 28214259 - 28214344
Alignment:
Q  39 ggaagctaggtaaggatgtggcttccttaactaattcatgagcaacc-cattcacttgcctcttaataaatgcaacatgagagttt 123  Q
    |||||||||  ||||| |||| | ||||  |||||||||| |||||| |||||||||| ||| |||||||  ||||||||||||||    
T  28214259 ggaagctagtcaaggaagtggatgcctttgctaattcatgggcaaccgcattcacttgtctcctaataaactcaacatgagagttt 28214344  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 40454553 - 40454589
Alignment:
Q  23 atttcataaaagatgtggaagctaggtaaggatgtgg 59  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  40454553 atttcataaaaaatgtggaagcttggtaaggatgtgg 40454589  T

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Target: scaffold0071 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 52788 - 52679
Alignment:
Q  20 ggaatttcataaaagatgtggaagctaggtaaggatgtggcttccttaactaattcatgagcaac-ccattcacttgcctcttaataaatgcaacatgag 118  Q
    |||||||||| ||||||||||||||||||  |  |||||||| ||||| |||| |||||| ||||  ||||  |||||||| |||||||  | |||||||    
T  52788 ggaatttcatcaaagatgtggaagctaggacataatgtggctgccttagctaactcatgaacaacgtcatttgcttgcctcctaataaactcgacatgag 52689  T
Q  119 agtttgttaa 128  Q
    ||||||||||    
T  52688 agtttgttaa 52679  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 47783099 - 47782994
Alignment:
Q  24 tttcataaaagatgtggaagctaggtaaggatgtggcttccttaactaattcatgagcaacc-cattcacttgcctcttaataaatgcaacatgagagtt 122  Q
    |||||| ||||||||||||||||||     |||||||| ||||| ||||||||||||||||| ||||  |||||||| || ||||  | |||||||||||    
T  47783099 tttcatcaaagatgtggaagctaggacctaatgtggctgccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 47783000  T
Q  123 tgttaa 128  Q
    ||||||    
T  47782999 tgttaa 47782994  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 25553328 - 25553252
Alignment:
Q  53 gatgtggcttccttaactaattcatgagcaacc-cattcacttgcctcttaataaatgcaacatgagagtttgttaa 128  Q
    ||||||||| ||||| ||||  |||| |||||| ||||  |||||||| |||||||  |||||||||||||||||||    
T  25553328 gatgtggctgccttagctaaagcatgtgcaacctcatttgcttgcctcctaataaactcaacatgagagtttgttaa 25553252  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 32073565 - 32073670
Alignment:
Q  24 tttcataaaagatgtggaagctaggtaaggatgtggcttccttaactaattcatgagcaacc-cattcacttgcctcttaataaatgcaacatgagagtt 122  Q
    |||||| ||||||||||||||||||     |||||||| ||||| ||||||||||||||||| ||||  |||||||| || ||||  | |||||||||||    
T  32073565 tttcatcaaagatgtggaagctaggacctaatgtggctgccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 32073664  T
Q  123 tgttaa 128  Q
    ||||||    
T  32073665 tgttaa 32073670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 29704743 - 29704653
Alignment:
Q  39 ggaagctaggtaaggatgtggcttccttaactaattcatgagcaacc-cattcacttgcctcttaataaatgcaacatgagagtttgttaa 128  Q
    |||||||||  ||||| |||| | ||||  |||||||||| |||||| ||||| |||||||| |||||||| |||||||||||||| ||||    
T  29704743 ggaagctagtcaaggaagtggatgcctttgctaattcatgggcaaccacattcgcttgcctcctaataaattcaacatgagagttttttaa 29704653  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 11619159 - 11619235
Alignment:
Q  53 gatgtggcttccttaactaattcatgagcaacc-cattcacttgcctcttaataaatgcaacatgagagtttgttaa 128  Q
    ||||||||| ||||||||||| |||| |||||| |||||  ||||||| |||||||  | |||||||||||||||||    
T  11619159 gatgtggctgccttaactaatgcatgcgcaacctcattcgtttgcctcctaataaactcgacatgagagtttgttaa 11619235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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