View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1571_low_6 (Length: 493)
Name: NF1571_low_6
Description: NF1571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1571_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 44 - 478
Target Start/End: Complemental strand, 4760563 - 4760138
Alignment:
| Q |
44 |
atttttattacttttgtgacttgaagatcaactcaagcccatatgaagatggatggatgatcaaaataaagccaagtgatccatctgaattagaatcctt |
143 |
Q |
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| T |
4760563 |
atttttattacttttgtgacttgaagatcaactcaagcccatatgaagatggatggatgatcaaaataaagccaagtgatccatctgaattagaatcctt |
4760464 |
T |
|
| Q |
144 |
gttgggtgcaaaggagtacacaaaattttgtgaggaagaagatgctgcacattgaaattaattt-caatatatgggactgactcnnnnnnnatatatgta |
242 |
Q |
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| T |
4760463 |
gttgggtgcaaaggagtacacaaaattttgtgaggaagaagatgctgcacattgaaattaattttcaatatatgggactgactctttttttatatatgta |
4760364 |
T |
|
| Q |
243 |
ctatgatattgttatctactttcttcaagtgcaatagaattgcttcaagttgttattgttttttccttgctattattgtcattgttaccgacacttcagt |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
4760363 |
ctatgatattgttatctactttcttcaagtgcaatagaattgcttcaagttgttattgttctttccttgctactattgtcattgttaccgacacttcagt |
4760264 |
T |
|
| Q |
343 |
gtgtcagtctttctatctagtcatgtaattaagaaggaaatttctctctttcacctctatccattattattttcatttcatttgaatgcttcttcgtaga |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
4760263 |
gtgtcagtctttctatctagtcatgtaattaagaaggaaatttctta--ttcacctctatccattattattttcattt-----gaatgcttc---gtagt |
4760174 |
T |
|
| Q |
443 |
taaaaacacatgtttgatagcgaagttcggtcaatt |
478 |
Q |
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| T |
4760173 |
taaaaacacatgtttgatagcgaagttcggtcaatt |
4760138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 4760614 - 4760656
Alignment:
| Q |
3 |
gacattaaatgttgacttatttcataagtcatgacataaacat |
45 |
Q |
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| T |
4760614 |
gacattaaatgttgacttatttcataagtcatgacataaacat |
4760656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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